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2024-01-11gnu: r-paws-customer-engagement: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.5.0. Change-Id: Ibcde22d17c635d8bfed08bc0464d58be2e87646d
2024-01-11gnu: r-paws-common: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.0. Change-Id: I3eef5a808b6b0918ffa6b15a01f9d1937301b352
2024-01-11gnu: r-mlr3: Update to 0.17.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3): Update to 0.17.2. Change-Id: I873e6c338e99624750da248083b8c650772dc19d
2024-01-11gnu: r-stanheaders: Update to 2.32.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders): Update to 2.32.5. Change-Id: Ie2cccf037fe7c63d8b3574b1504b378f444fb6b3
2024-01-11gnu: r-patchwork: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-patchwork): Update to 1.2.0. Change-Id: I10574362f942182b47d29d73747355cec2d7111a
2024-01-11gnu: r-gbm: Update to 2.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-gbm): Update to 2.1.9. Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
2024-01-11gnu: r-yulab-utils: Update to 0.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3. Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
2024-01-11gnu: r-compositions: Update to 2.0-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-compositions): Update to 2.0-7. Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
2024-01-11gnu: r-targets: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-targets): Update to 1.4.1. Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
2024-01-11gnu: r-tarchetypes: Update to 0.7.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11. Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
2024-01-11gnu: r-writexls: Update to 6.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-writexls): Update to 6.5.0. Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
2024-01-11gnu: r-ggrepel: Update to 0.9.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5. Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
2024-01-11gnu: r-rcpp: Update to 1.0.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12. Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
2024-01-11gnu: r-glue: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.7.0. Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
2024-01-11gnu: r-reprex: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reprex): Update to 2.1.0. Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
2024-01-11gnu: r-astsa: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 2.1. Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
2024-01-11gnu: r-ggpp: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6. Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
2024-01-11gnu: r-zcompositions: Update to 1.5.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1. Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
2024-01-11gnu: r-castor: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-castor): Update to 1.8.0. [propagated-inputs]: Add r-jsonlite. Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
2024-01-11gnu: r-rcurl: Update to 1.98-1.14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14. [native-inputs]: Move libxml2 from here... [inputs]: ...to here. Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
2024-01-11gnu: r-rstan: Update to 2.32.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.32.5. [properties]: Tell updater to leave tzdata-for-tests. Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
2024-01-11gnu: r-topicmodels: Update to 0.2-16.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16. [properties]: Tell updater not to remove GSL from inputs. Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
2024-01-11gnu: r-rpostgresql: Update to 0.7-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6. [properties]: Tell updater not to remove postgresql input. Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
2024-01-11gnu: r-readr: Update to 2.1.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-readr): Update to 2.1.5. Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
2024-01-11gnu: python-afdko: Disable failing test.Ricardo Wurmus
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable test_alt_missing_glyph. Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
2024-01-10gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk11)[source]: Add patch. Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c
2024-01-10gnu: openjdk10: Simplify.Ricardo Wurmus
* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build phase. Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
2024-01-10gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk10)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
2024-01-10gnu: openjdk9: Simplify.Ricardo Wurmus
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN. [arguments]: Delete trailing #T from build phases. Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
2024-01-10gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk9)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
2024-01-10gnu: python-distributed: Disable breaking test.Ricardo Wurmus
This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2024-01-10gnu: Add r-jaspar2020.nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10gnu: Add r-dsb.nafkhamdc
* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10gnu: r-signac: Update to 1.12.0-1.8ecdde2.nafkhamdc
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2. Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
2024-01-10gnu: Add r-escape.nafkhamdc
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-10gnu: Add python-telomerecat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
2024-01-10gnu: Add python-parabam.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
2024-01-10gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
2024-01-10gnu: mesa: Fix cross-compilation.Zheng Junjie
* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: yaml-cpp: Update to 0.8.0.Zheng Junjie
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: Add cl-stripe.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
2024-01-10gnu: nyxt: Update to 3.11.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-10gnu: cl-prompter: Update to 0.1.1-0.7890ed5.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
2024-01-09gnu: jami-docs: Update to 0.0.0-2.a48997d.Maxim Cournoyer
* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d. Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e
2024-01-09gnu: jami: Update to 20231222.2.Maxim Cournoyer
* gnu/packages/jami.scm (%jami-version): Rename to... (%jami-nightly-version): ... this. Update to 20231222.2. (%jami-daemon-commit): New variable. (%jami-sources): Delete variable. (libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit. [source]: Fetch from git. Apply libjami-ac-config-files.patch. [arguments] <make-flags>: Skip ut_media_player test. <phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout phases. [inputs]: Replace dbus-c++ with sdbus-c++. Add dhtnet. Replace libgit2 with libgit2-1.6. (jami): Set version to %jami-nightly-version. [source]: Fetch from git. Apply new jami-qml-tests-discovery.patch, jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch patches. [arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF. <phases>: Delete change-directory/maybe. Adjust check phase. Add fake-x11-environment, copy-3rdparty-source-dependencies and disable-problematic-tests phases. [inputs]: Add md4c and tidy-html. * gnu/packages/patches/jami-qml-tests-discovery.patch: New file. * gnu/packages/patches/libjami-ac-config-files.patch: Likewise. * gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise. * gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise. * gnu/packages/patches/jami-libjami-headers-search.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch. Series-changes: 2 - Update Jami to latest nightly version (20231222.2) Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
2024-01-09gnu: Add sortfilterproxymodel.Maxim Cournoyer
* gnu/packages/jami.scm (sortfilterproxymodel): New variable. Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287
2024-01-09gnu: ffmpeg-jami: Relocate to (gnu packages video).Maxim Cournoyer
To avoid Guile module dependency cycles, inherited packages must be defined in the same module. Use this opportunity to simplify the patches applying mechanism, versioning custom patches the same as for other packages. * gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file. * gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure. (%ffmpeg-default-configure-flags): Delete variable. (ffmpeg-compose-configure-flags): Delete procedure. (ffmpeg-jami): Move to... * gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and repatriate configure flags. Change-Id: Id374fae18240cd76b224915d80b61422635ccb77
2024-01-09gnu: ffmpeg-jami: Update configure flags.Maxim Cournoyer
* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags. Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8
2024-01-09gnu: pjproject-jami: Update and relocate.Maxim Cournoyer
* gnu/packages/jami.scm (pjproject-jami): Move to... * gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest commit. [arguments]: Use same configure flags as done in Jami/DhtNet projects. Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837
2024-01-09gnu: Add dhtnet.Maxim Cournoyer
* gnu/packages/networking.scm (dhtnet): New variable. Change-Id: I91cc3541f476c8614be35b1ae7cb1740690f685a