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* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.5.0.
Change-Id: Ibcde22d17c635d8bfed08bc0464d58be2e87646d
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* gnu/packages/cran.scm (r-paws-common): Update to 0.7.0.
Change-Id: I3eef5a808b6b0918ffa6b15a01f9d1937301b352
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* gnu/packages/cran.scm (r-mlr3): Update to 0.17.2.
Change-Id: I873e6c338e99624750da248083b8c650772dc19d
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* gnu/packages/cran.scm (r-stanheaders): Update to 2.32.5.
Change-Id: Ie2cccf037fe7c63d8b3574b1504b378f444fb6b3
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* gnu/packages/cran.scm (r-patchwork): Update to 1.2.0.
Change-Id: I10574362f942182b47d29d73747355cec2d7111a
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* gnu/packages/cran.scm (r-gbm): Update to 2.1.9.
Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
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* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3.
Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
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* gnu/packages/cran.scm (r-compositions): Update to 2.0-7.
Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
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* gnu/packages/cran.scm (r-targets): Update to 1.4.1.
Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
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* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11.
Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
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* gnu/packages/cran.scm (r-writexls): Update to 6.5.0.
Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
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* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5.
Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
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* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12.
Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
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* gnu/packages/cran.scm (r-glue): Update to 1.7.0.
Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
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* gnu/packages/cran.scm (r-reprex): Update to 2.1.0.
Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
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* gnu/packages/cran.scm (r-astsa): Update to 2.1.
Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
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* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6.
Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
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* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1.
Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
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* gnu/packages/cran.scm (r-castor): Update to 1.8.0.
[propagated-inputs]: Add r-jsonlite.
Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
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* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14.
[native-inputs]: Move libxml2 from here...
[inputs]: ...to here.
Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
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* gnu/packages/cran.scm (r-rstan): Update to 2.32.5.
[properties]: Tell updater to leave tzdata-for-tests.
Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
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* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16.
[properties]: Tell updater not to remove GSL from inputs.
Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
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* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6.
[properties]: Tell updater not to remove postgresql input.
Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
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* gnu/packages/statistics.scm (r-readr): Update to 2.1.5.
Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
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* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable
test_alt_missing_glyph.
Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
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Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0.
* gnu/packages/java.scm (openjdk11)[source]: Add patch.
Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c
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* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build
phase.
Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
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Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0.
* gnu/packages/java.scm (openjdk10)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
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* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN.
[arguments]: Delete trailing #T from build phases.
Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
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Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0.
* gnu/packages/java.scm (openjdk9)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
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This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
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* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
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* gnu/packages/bioconductor.scm (r-dsb): New variable.
Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
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* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2.
Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
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* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
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* gnu/packages/bioinformatics.scm (python-telomerecat): New variable.
Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
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* gnu/packages/bioinformatics.scm (python-parabam): New variable.
Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
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Fixes <https://issues.guix.gnu.org/68333>.
* gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’
parameter and honor it.
[native-inputs]: Add patch for “jdk-drop”.
(icedtea-8): Likewise.
* gnu/packages/patches/jdk-currency-time-bomb.patch,
gnu/packages/patches/jdk-currency-time-bomb2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
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* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force
the use of the cmake method to find llvm.
Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0.
Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
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* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
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* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d.
Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e
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* gnu/packages/jami.scm (%jami-version): Rename to...
(%jami-nightly-version): ... this. Update to 20231222.2.
(%jami-daemon-commit): New variable.
(%jami-sources): Delete variable.
(libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit.
[source]: Fetch from git. Apply libjami-ac-config-files.patch.
[arguments] <make-flags>: Skip ut_media_player test.
<phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout
phases.
[inputs]: Replace dbus-c++ with sdbus-c++.
Add dhtnet. Replace libgit2 with libgit2-1.6.
(jami): Set version to %jami-nightly-version.
[source]: Fetch from git. Apply new jami-qml-tests-discovery.patch,
jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch
patches.
[arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF.
<phases>: Delete change-directory/maybe.
Adjust check phase. Add fake-x11-environment,
copy-3rdparty-source-dependencies and disable-problematic-tests phases.
[inputs]: Add md4c and tidy-html.
* gnu/packages/patches/jami-qml-tests-discovery.patch: New file.
* gnu/packages/patches/libjami-ac-config-files.patch: Likewise.
* gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise.
* gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise.
* gnu/packages/patches/jami-libjami-headers-search.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch.
Series-changes: 2
- Update Jami to latest nightly version (20231222.2)
Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
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* gnu/packages/jami.scm (sortfilterproxymodel): New variable.
Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287
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To avoid Guile module dependency cycles, inherited packages must be defined in
the same module. Use this opportunity to simplify the patches applying
mechanism, versioning custom patches the same as for other packages.
* gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file.
* gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch:
Likewise.
* gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure.
(%ffmpeg-default-configure-flags): Delete variable.
(ffmpeg-compose-configure-flags): Delete procedure.
(ffmpeg-jami): Move to...
* gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and
repatriate configure flags.
Change-Id: Id374fae18240cd76b224915d80b61422635ccb77
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* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags.
Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8
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* gnu/packages/jami.scm (pjproject-jami): Move to...
* gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest
commit.
[arguments]: Use same configure flags as done in Jami/DhtNet projects.
Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837
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* gnu/packages/networking.scm (dhtnet): New variable.
Change-Id: I91cc3541f476c8614be35b1ae7cb1740690f685a
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