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2023-03-03gnu: Add r-seurat-utils.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
2023-03-03gnu: Add r-hgnchelper.Navid Afkhami
* gnu/packages/cran.scm (r-hgnchelper): New variable.
2023-03-03gnu: Add r-tictoc.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-tictoc): New variable.
2023-03-03gnu: Add r-ggexpress.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-ggexpress): New variable.
2023-03-03gnu: Add r-markdownreports.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownreports): New variable.
2023-03-03gnu: Add r-markdownhelpers.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownhelpers): New variable.
2023-03-03gnu: Add r-codeandroll2.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-codeandroll2): New variable.
2023-03-03gnu: Add r-readwriter.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-readwriter): New variable.
2023-03-03gnu: Add r-stringendo.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-stringendo): New variable.
2023-03-03gnu: Add julia-astrotime.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-astrotime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-muladdmacro.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-muladdmacro): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-itemgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-itemgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-lightgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-lightgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-arnoldimethod.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-arnoldimethod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-inflate.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-inflate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-earthorientation.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-earthorientation): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-remotefiles.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-remotefiles): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-optionaldata.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-optionaldata): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-leapseconds.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-leapseconds): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add r-oscope.Navid Afkhami
* gnu/packages/bioconductor.scm (r-oscope): New variable.
2023-03-03gnu: cl-tripod: Fix build.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-tripod)[arguments]: Use the 'assoc-ref' form for the bin output. (cl-tripod)[outputs]: Remove bin. (ecl-tripod)[outputs]: Remove bin. [arguments]: Remove 'build-program' phase.
2023-03-03gnu: eisl: Update to 2.72.Guillaume Le Vaillant
* gnu/packages/lisp.scm (eisl): Update to 2.72. [arguments]: Update 'fix-paths' phase.
2023-03-03gnu: gcl: Update to 2.6.14.Guillaume Le Vaillant
* gnu/packages/lisp.scm (gcl): Update to 2.6.14.
2023-03-03gnu: sbcl: Update to 2.3.2.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl): Update to 2.3.2.
2023-02-26gnu: fish: Update to 3.6.0.Winter
* gnu/packages/shells.scm (fish): Update to 3.6.0. [source]: Remove snippet, as the bundled PCRE2 sources have been removed (see CHANGELOG.rst). Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-02-26gnu: go-github-com-robfig-cron-1.2: Move to (gnu packages golang).Josselin Poiret
Because (gnu packages golang) and (gnu packages check) use each other, this avoids an undefined symbol due to a module dependency cycle. * gnu/packages/check.scm (go-github-com-robfig-cron-1.2): Move to... * gnu/packages/golang.scm (go-github-com-robfig-cron-1.2): ...here. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-03-02gnu: make-mozilla-with-l10n: Use the copy-build-system.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/61742>. * gnu/packages/gnuzilla.scm (make-mozilla-with-l10n): Rewrite to use the copy-build-system. Reported-by: Feng Shu <tumashu@163.com>
2023-03-02gnu: grimshot: Correct man page path.Antero Mejr
* gnu/packages/wm.scm (grimshot)[arguments]: Remove 'usr/' from man page path. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-03-02gnu: Add r-mmuphin.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-mmuphin): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-02gnu: python-acme, certbot: Update to 2.3.0.Jack Hill
* gnu/packages/tls.scm (python-acme): Update to 2.3.0. (certbot)[source]: Update hash. [propagated-inputs]: Remove python-zope-interface and python-zope-component. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-03-02gnu: grub-efi: Remove test inputs.Efraim Flashner
* gnu/packages/bootloaders.scm (grub-efi)[native-inputs]: Remove parted, qemu-minimal, xorriso.
2023-03-02gnu: Add r-chromomap.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-chromomap): New variable.
2023-03-02gnu: libmicrohttpd: Update to 0.9.76.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.76.
2023-03-02gnu: gama: Update to 2.24.Efraim Flashner
* gnu/packages/gps.scm (gama): Update to 2.24.
2023-03-02gnu: pcmanfm-qt: Update to 1.2.1.Juliana Sims
* gnu/packages/lxqt.scm (pcmanfm-qt): Update to 1.2.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: libfm-qt: Update to 1.2.1.Juliana Sims
* gnu/packages/lxqt.scm (libfm-qt): Update to 1.2.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: lxqt-panel: Update to 1.2.1.Juliana Sims
* gnu/packages/lxqt.scm (lxqt-panel): Update to 1.2.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-01gnu: FFmpeg: Enable libwebp.Ryan Sundberg
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libwebp. [arguments]: Pass '--enable-libwebp' to #:configure-flags. (ffmpeg-2.8)[inputs]: Remove libwebp. Co-authored-by: Leo Famulari <leo@famulari.name>
2023-03-02gnu: gimp: Don't retain reference on GCC.宋文武
Partly fixes <https://issues.guix.gnu.org/57677>. * gnu/packages/gimp.scm (gimp)[arguments]: Add #:modules and #:phases.
2023-03-02gnu: Remove broken xf86 video drivers.宋文武
Those packages build failed with current xorg-server: openchrome: multiple definition of some functions. other: missing headers for xf86RamDac.h, IBM.h, etc. * gnu/packages/xorg.scm (xf86-video-glint, xf86-video-openchrome xf86-video-suncg6, xf86-video-sunffb, xf86-video-tga xf86-video-trident): Remove packages. * gnu/packages/patches/xf86-video-tga-remove-mibstore.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2023-03-02gnu: cloc: Update to 1.96.1.Philippe SWARTVAGHER
* gnu/packages/code.scm (cloc): Update to 1.96.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: dos2unix: Use new package style.Timotej Lazar
* gnu/packages/textutils.scm (dos2unix)[arguments]: Use gexps. [native-inputs]: Drop labels. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: dos2unix: Update to 7.4.4.Timotej Lazar
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: mympd: Update to 10.2.4.Bruno Victal
* gnu/packages/mpd.scm (mympd): Update to 10.2.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-02gnu: Add r-maaslin2.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-maaslin2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-02gnu: Add r-metagenomeseq.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
2023-03-02gnu: Add r-chemometrics.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-chemometrics): New variable.
2023-03-02gnu: Add r-som.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-som): New variable.
2023-03-02gnu: Add r-cplm.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-cplm): New variable.
2023-03-02gnu: Add r-biglm.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-biglm): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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