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2023-06-01gnu: bear: Update to 3.1.2.Efraim Flashner
* gnu/packages/build-tools.scm (bear): Update to 3.1.2.
2023-06-01gnu: Add python-ete3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-ete3): New variable.
2023-06-01gnu: parallel: Update to 20230522.Andy Tai
* gnu/packages/parallel.scm (parallel): Update to 20230522. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: zenity: Update to 3.44.1.Greg Hogan
* gnu/packages/gnome.scm (zenity): Update to 3.44.1. [native-inputs]: Add gtk+:bin. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: iperf: Update to 3.13.Greg Hogan
* gnu/packages/networking.scm (iperf): Update to 3.13. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: iotop: Update to 1.23.Greg Hogan
* gnu/packages/linux.scm (iotop): Update to 1.23. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: html-xml-utils: Update to 8.6.Greg Hogan
* gnu/packages/xml.scm (html-xml-utils): Update to 8.6. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: hstr: Update to 3.1.Greg Hogan
* gnu/packages/shellutils.scm (hstr): Update to 3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: glances: Update to 3.4.0.3.Greg Hogan
* gnu/packages/python-xyz.scm (glances): Update to 3.4.0.3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: fish: Update to 3.6.1.Greg Hogan
* gnu/packages/shells.scm (fish): Update to 3.6.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: fio: Update to 3.35.Greg Hogan
* gnu/packages/benchmark.scm (fio): Update to 3.35. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: atop: Update to 2.9.0.Greg Hogan
* gnu/packages/admin.scm (atop): Update to 2.9.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01gnu: openblas: Update make-flags comments and coding style.Efraim Flashner
* gnu/packages/maths.scm (openblas)[arguments]: In the make-flags use the target-* macros. Adjust the wording describing why the different architectures have the flags they do.
2023-06-01gnu: openblas: Update architectures we provide substitutes for.Efraim Flashner
* gnu/packages/maths.scm (openblas)[arguments]: Adjust the substitutable? flag to only not provide substitutes when building for powerpc-linux. Adjust the comment accordingly.
2023-06-01gnu: openblas-ilp64: Add powerpc64le-linux as a supported system.Efraim Flashner
* gnu/packages/maths.scm (openblas-ilp64)[supported-systems]: Add powerpc64le-linux.
2023-06-01gnu: r-mbecs: Fix indentation.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and spelling of comment.
2023-06-01gnu: Add squashfuse.Ricardo Wurmus
* gnu/packages/file-systems.scm (squashfuse): New variable.
2023-06-01gnu: Add r-mbecs.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
2023-05-31gnu: Remove linux-libre 6.2.Leo Famulari
This kernel series is no longer supported upstream. * gnu/packages/linux.scm (linux-libre-6.2-version, linux-libre-6.2-gnu-revision, deblob-scripts-6.2, linux-libre-6.2-pristine-source, linux-libre-6.2-source, linux-libre-headers-6.2, linux-libre-6.2): Remove variables. * gnu/packages/aux-files/linux-libre/6.2-arm.conf, gnu/packages/aux-files/linux-libre/6.2-arm64.conf, gnu/packages/aux-files/linux-libre/6.2-i686.conf, gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Delete files. * Makefile.am (AUX_FILES): Remove them.
2023-05-31gnu: linux-libre 4.14: Update to 4.14.316.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.316. (linux-libre-4.14-pristine-source): Update hash.
2023-05-31gnu: linux-libre 4.19: Update to 4.19.284.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.284. (linux-libre-4.19-pristine-source): Update hash.
2023-05-31gnu: linux-libre 5.4: Update to 5.4.244.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.244. (linux-libre-5.4-pristine-source): Update hash.
2023-05-31gnu: linux-libre 5.10: Update to 5.10.181.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.181. (linux-libre-5.10-pristine-source): Update hash.
2023-05-31gnu: linux-libre 5.15: Update to 5.15.114.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.114. (linux-libre-5.15-pristine-source): Update hash.
2023-05-31gnu: linux-libre 6.1: Update to 6.1.31.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.31. (linux-libre-6.1-pristine-source): Update hash.
2023-05-31gnu: linux-libre: Update to 6.3.5.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.5. (linux-libre-6.3-pristine-source): Update hash.
2023-05-31gnu: Add updater input properties for R and Python packages.Ludovic Courtès
* gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs) (r-lifecycle): Turn comment about r-knitr into 'properties' field. * gnu/packages/mpi.scm (python-mpi4py)[properties]: New field.
2023-05-31gnu: r-desctools: Update to 0.99.49.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.49. [propagated-inputs]: Add r-withr.
2023-05-31gnu: r-rrcov: Update to 1.7-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-3.
2023-05-31gnu: r-rcpparmadillo: Update to 0.12.4.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.0.0.
2023-05-31gnu: r-knitr: Update to 1.43.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.43.
2023-05-31gnu: r-markdown: Update to 1.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-markdown): Update to 1.7.
2023-05-31gnu: r-matrix: Update to 1.5-4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.1.
2023-05-31gnu: r-cartogram: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-cartogram): Update to 0.3.0.
2023-05-31gnu: r-zoib: Update to 1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoib): Update to 1.6.
2023-05-31gnu: r-crul: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-crul): Update to 1.4.0.
2023-05-31gnu: r-dismo: Update to 1.3-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-dismo): Update to 1.3-14.
2023-05-31gnu: r-rgeos: Update to 0.6-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgeos): Update to 0.6-3.
2023-05-31gnu: r-tzdb: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tzdb): Update to 0.4.0.
2023-05-31gnu: r-lwgeom: Update to 0.2-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-13.
2023-05-31gnu: r-mlr3pipelines: Update to 0.5.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.5.0-1. [native-inputs]: Add r-knitr.
2023-05-31gnu: r-mlr3misc: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.12.0.
2023-05-31gnu: r-scattermore: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-scattermore): Update to 1.1.
2023-05-31gnu: r-igraph: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 1.4.3.
2023-05-31gnu: r-confintr: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-confintr): Update to 1.0.1.
2023-05-31gnu: r-spatstat: Update to 3.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-6.
2023-05-31gnu: r-spatstat-random: Update to 3.1-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.1-5.
2023-05-31gnu: r-spatstat-linnet: Update to 3.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-1.
2023-05-31gnu: r-spatstat-geom: Update to 3.2-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-1.
2023-05-31gnu: r-spatstat-utils: Update to 3.0-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.0-3.
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