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2023-09-14gnu: r-ggeffects: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.3.1.
2023-09-14gnu: r-performance: Update to 0.10.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.10.5.
2023-09-14gnu: r-targets: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-targets): Update to 1.3.0.
2023-09-14gnu: r-tarchetypes: Update to 0.7.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.8.
2023-09-14gnu: r-phyclust: Update to 0.1-34.Ricardo Wurmus
* gnu/packages/cran.scm (r-phyclust): Update to 0.1-34.
2023-09-14gnu: r-flextable: Update to 0.9.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.9.3.
2023-09-14gnu: r-insight: Update to 0.19.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.19.4.
2023-09-14gnu: r-reticulate: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): Update to 1.32.0.
2023-09-14gnu: r-rio: Update to 0.5.30.Ricardo Wurmus
* gnu/packages/cran.scm (r-rio): Update to 0.5.30.
2023-09-14gnu: r-statsexpressions: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-statsexpressions): Update to 1.5.2.
2023-09-14gnu: r-prodlim: Update to 2023.08.28.Ricardo Wurmus
* gnu/packages/cran.scm (r-prodlim): Update to 2023.08.28.
2023-09-14gnu: r-lpsolve: Update to 5.6.19.Ricardo Wurmus
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.19.
2023-09-14gnu: r-lambertw: Update to 0.6.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.8.
2023-09-14gnu: r-ctrdata: Update to 1.15.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ctrdata): Update to 1.15.1.
2023-09-14gnu: r-rcppnumerical: Update to 0.6-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.6-0.
2023-09-14gnu: r-askpass: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-askpass): Update to 1.2.0.
2023-09-14gnu: r-mboost: Update to 2.9-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-mboost): Update to 2.9-8.
2023-09-14gnu: r-climaemet: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-climaemet): Update to 1.2.0.
2023-09-14gnu: r-ggfittext: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.1.
2023-09-14gnu: r-htscluster: Update to 2.0.11.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.11.
2023-09-13gnu: r-abn: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.0. [propagated-inputs]: Add r-mclogit and r-stringi.
2023-09-13gnu: r-glmnetutils: Update to 1.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-glmnetutils): Update to 1.1.9.
2023-09-13gnu: r-hmisc: Update to 5.1-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-1.
2023-09-13gnu: r-rstan: Update to 2.26.23.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.26.23. [native-inputs]: Remove pandoc. [propagated-inputs]: Add r-quickjsr.
2023-09-13gnu: r-iheatmapr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.0. [source]: Delete minified plotly JavaScript. [native-inputs]: Add esbuild and js-plotly. [arguments]: Add phase to minify plotly.js.
2023-09-13gnu: r-leaflet: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.0. [source]: Do not delete jquery.min.js, because it is no longer included. [arguments]: Adjust minification accordingly. [native-inputs]: Remove js-jquery. [propagated-inputs]: Remove r-base64enc and r-markdown; add r-jquerylib and r-xfun.
2023-09-13gnu: python-hicmatrix: Remove custom 'check phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Remove custom 'check phase.
2023-09-13gnu: r-radiant-data: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.1. [propagated-inputs]: Add r-arrow.
2023-09-13gnu: r-arrow: Update to 13.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.
2023-09-13gnu: apache-arrow: Update to 13.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 13.0.0.
2023-09-13gnu: r-minqa: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.6. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2023-09-13gnu: r-dt: Update to 0.29.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.29. [propagated-inputs]: Add r-httpuv.
2023-09-13gnu: python-hicmatrix: Remove syntax error in setup.py.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Add phase remove-invalid-syntax. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13gnu: Add r-quickjsr.Ricardo Wurmus
* gnu/packages/cran.scm (r-quickjsr): New variable.
2023-09-13gnu: octave-cli: Update to 8.3.0Andy Tai
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0 Signed-off-by: Eric Bavier <bavier@posteo.net>
2023-09-13gnu: nyxt: Update to 3.7.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.7.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: cl-nasdf: Update to 0.1.8.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.8. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: cl-njson: Update to 1.2.0.Artyom Bologov
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.2.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: Add r-interactivedisplay.Navid Afkhami
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13gnu: hdf4, hdf4-alt: Update to 4.2.16-2.Andreas Enge
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches that do not apply any more. [arguments]: Drop configure flag related to libtirpc. Add configure flag to build xdr library and drop unneeded substitutions. * gnu/packages/patches/hdf4-architectures.patch, gnu/packages/patches/hdf4-tirpc.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Unregister patches.
2023-09-13gnu: yoyo-migrations: Update to 8.2.0.Munyoki Kilyungi
* gnu/packages/databases.scm (yoyo-migrations): Update to 8.2.0. [propagated-inputs]: Add python-importlib-metadata. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: libvterm: Update arguments style.Zheng Junjie
* gnu/packages/terminals.scm (libvterm)[arguments]: Update arguments style. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: libvterm: Update to 0.3.3.Zheng Junjie
* gnu/packages/terminals.scm (libvterm): Update to 0.3.3. [source]: Use launchpad.net url. [arguments]: Use CC-FOR-TARGET. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: tennix: Update to 1.3.4.Hendursaga
* gnu/packages/games.scm (tennix): Update to 1.3.4. [arguments]<#:phases>: Update style and remove fix-include phase. [inputs]: Remove labels, update to SDL2, add SDL2_gfx dependency. [license]: Remove LGPL license, as SDL_rotozoom is no longer included. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: python-qtsass: Update to 0.4.0.Sharlatan Hellseher
This also fixes test failures preventing the package from building. * gnu/packages/python-xyz.scm (python-qtsass): Update to 0.4.0, fix build. [native-inputs]: Add python-flaky. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: python-libsass: Update to 0.22.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.22.0. [phases]: Add new phase 'silent-failing-tests and disable 2 failing tests to complete build. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: emilua: Update to 0.4.3.Valter Nazianzeno
* gnu/packages/lua.scm (emilua): Update to 0.4.3. [source]: Remove recursive? and replace with inputs. [arguments]: Update style, add patch phase, enable tests and enable some more features. [native-inputs]: Add gperf, gawk and xdd. [inputs]: Add emilua-http and trial-protocol as origin is no longer recursive, also add serd, sord, libcap and liburing. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: Add swineherd.Ricardo Wurmus
* gnu/packages/admin.scm (swineherd): New variable.
2023-09-12gnu: python-django-4.0: Use $TZDIR.Maxim Cournoyer
* gnu/packages/django.scm (python-django-4.0) [native-search-paths]: Use $TZDIR.
2023-09-12gnu: qemu: Reinstate the iothreads-commit-active test.Maxim Cournoyer
* gnu/packages/virtualization.scm (qemu) [arguments]: Add set-SOCK_DIR phase. (qemu-minimal) [arguments]: Delete the disable-extra-tests phase.
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