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2020-06-22gnu: Remove rust-regex-1.1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-regex-1.1): Remove variable. (rust-bindgen-0.50, rust-bindgen-0.49, rust-clap-2, rust-compiletest-rs-0.2, rust-console-0.7, rust-docopt-1.1, rust-env-logger-0.7, rust-env-logger-0.6, rust-env-logger-0.5, rust-gimli-0.18, rust-globset-0.4, rust-grep-cli-0.1, rust-grep-matcher-0.1, rust-grep-regex-0.1, rust-grep-searcher-0.1, rust-ignore-0.4, rust-nom-5, rust-nom-4.2, rust-once-cell-1.2, rust-proptest-0.9, rust-proptest-0.8, rust-pulldown-cmark-0.4, rust-regex-automata-0.1, rust-rusqlite-0.19, rust-syn-0.15, rust-ucd-parse-0.1, rust-version-sync-0.8) [arguments]: Replace rust-regex-1.1 with 1.3. * gnu/packages/rust-apps.scm (ripgrep)[arguments]: Same.
2020-06-22gnu: Add rust-once-cell-0.1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-once-cell-0.1): New variable.
2020-06-22gnu: Add rust-gettext-rs-0.4.Efraim Flashner
* gnu/packages/crates-io.scm (rust-gettext-rs-0.4): New variable.
2020-06-22gnu: Add rust-gettext-sys-0.19.Efraim Flashner
* gnu/packages/crates-io.scm (rust-gettext-sys-0.19): New variable.
2020-06-22gnu: Add rust-locale-config-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-locale-config-0.2): New variable.
2020-06-22gnu: Add rust-proptest-0.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-proptest-0.7): New variable.
2020-06-22gnu: Add rust-regex-syntax-0.4.Efraim Flashner
* gnu/packages/crates-io.scm (rust-regex-syntax-0.4): New variable.
2020-06-22gnu: Add rust-section-testing-0.0.Efraim Flashner
* gnu/packages/crates-io.scm (rust-section-testing-0.0): New variable.
2020-06-22gnu: rust-tempfile-3.1: Rename to rust-tempfile-3.Efraim Flashner
* gnu/packages/crates-io.scm (rust-tempfile-3.1): Rename to ... (rust-tempfile-3): .. this. (rust-cairo-rs-0.8, rust-cairo-rs-0.7, rust-cc-1.0, rust-compiletest-rs-0.3, rust-filetime-0.2, rust-gdk-pixbuf-sys-0.9, rust-gio-sys-0.9, rust-git2-0.11, rust-glib-0.9, rust-glib-0.8, rust-glib-sys-0.9, rust-gobject-sys-0.9, rust-handlebars-2.0, rust-lscolors-0.6, rust-native-tls-0.2, rust-nix-0.15, rust-nix-0.14, rust-no-panic-0.1, rust-pango-sys-0.9, rust-pangocairo-0.10, rust-proptest-0.9, rust-proptest-0.8, rust-rustdoc-stripper-0.1, rust-rustls-0.16, rust-rusty-fork-0.2, rust-sourcefile-0.1, rust-tiff-0.2, rust-tokio-0.2, rust-tokio-fs-0.1, rust-tokio-uds-0.2, rust-wayland-client-0.23, rust-wayland-client-0.21, rust-xattr-0.2) [arguments]: Adjust accordingly. * gnu/packages/rust-apps.scm (rust-cbindgen, tokei)[arguments]: Same. * gnu/packages/sequoia.scm (sequoia)[arguments]: Same. * gnu/packages/terminals.scm (alacritty)[arguments]: Same.
2020-06-22gnu: Remove rust-tempfile-3.0.Efraim Flashner
* gnu/packages/crates-io.scm (rust-tempfile-3.0): Remove variable. (rust-compiletest-rs-0.3, rust-filetime-0.2, rust-handlebars-2.0, rust-nix-0.15, rust-nix-0.14, rust-proptest-0.9, rust-proptest-0.8, rust-rustls-0.16, rust-rusty-fork-0.2, rust-tiff-0.2, rust-tokei-fs-0.1, rust-tokio-uds-0.2, rust-xattr-0.2) [arguments]: Replace rust-tempfile-3.0 with 3.1. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
2020-06-22gnu: rust-proptest-0.9: Update to 0.9.6.Efraim Flashner
* gnu/packages/crates-io.scm (rust-proptest-0.9): Update to 0.9. [arguments]: Don't skip build. In cargo-inputs replace rust-rand-0.4 with 0.6, rust-rand-chacha-0.2 with 0.1, rust-rand-xorshift-0.2 with 0.1.
2020-06-22gnu: r-zoo: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-zoo): Move this variable from here... * gnu/packages/cran.scm (r-zoo): ...to here.
2020-06-22gnu: r-directlabels: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-directlabels): Move this variable from here... * gnu/packages/cran.scm (r-directlabels): ...to here.
2020-06-22gnu: r-boruta: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-boruta): Move this variable from here... * gnu/packages/cran.scm (r-boruta): ...to here.
2020-06-22gnu: r-boruta: Fix indentation and description.Ricardo Wurmus
* gnu/packages/statistics.scm (r-boruta)[description]: Fix indentation, add line breaks, and complete the first sentence fragment.
2020-06-22gnu: r-fit-models: Update to 0.63.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fit-models): Update to 0.63.
2020-06-22gnu: r-glmnet: Update to 4.0-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-glmnet): Update to 4.0-2. [propagated-inputs]: Add r-survival.
2020-06-22gnu: r-rmarkdown: Update to 2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.3.
2020-06-22gnu: r-backports: Update to 1.1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.1.8.
2020-06-22gnu: r-ggplot2: Update to 3.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.2.
2020-06-22gnu: r-isoband: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-isoband): Update to 0.2.2. [propagated-inputs]: Remove r-rcpp.
2020-06-22gnu: r-zvcv: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.0. [propagated-inputs]: Remove r-partitions; add r-bh, r-dplyr, r-magrittr, and r-rlinsolve.
2020-06-22gnu: r-umap: Update to 0.2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-umap): Update to 0.2.6.0.
2020-06-22gnu: r-ldheatmap: Update to 0.99-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-8.
2020-06-22gnu: r-nonnest2: Update to 0.5-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-4.
2020-06-22gnu: r-rcppgsl: Update to 0.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.8. [native-inputs]: Remove r-knitr.
2020-06-22gnu: r-ggeffects: Update to 0.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.15.0.
2020-06-22gnu: r-bayestestr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.7.0.
2020-06-22gnu: r-rstatix: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstatix): Update to 0.6.0. [propagated-inputs]: Add r-generics.
2020-06-22gnu: r-radiant-data: Update to 1.3.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.9.
2020-06-22gnu: r-tinytex: Update to 0.24.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.24.
2020-06-22gnu: r-xfun: Update to 0.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.15.
2020-06-22gnu: r-calibrate: Update to 1.7.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-calibrate): Update to 1.7.7.
2020-06-22gnu: r-htmltable: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltable): Update to 2.0.0. [native-inputs]: Add r-knitr.
2020-06-22gnu: r-htmltools: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.0. [propagated-inputs]: Remove r-rcpp; add r-base64enc.
2020-06-22gnu: r-v8: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 3.2.0.
2020-06-22gnu: r-hdf5array: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
2020-06-22gnu: r-rhdf5: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
2020-06-22gnu: r-biomart: Update to 2.44.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
2020-06-22gnu: r-genomeinfodb: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
2020-06-22gnu: r-gdsfmt: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
2020-06-22gnu: r-cicero: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi.
2020-06-22gnu: r-cytoml: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2.
2020-06-22gnu: r-wiggleplotr: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
2020-06-22gnu: r-regioner: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
2020-06-22gnu: Add r-rlinsolve.Ricardo Wurmus
* gnu/packages/cran.scm (r-rlinsolve): New variable.
2020-06-22gnu: cuirass: Update to 0.0.1-33-61cc56f6.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
2020-06-22gnu: xl2tpd: Fix typo.Mathieu Othacehe
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
2020-06-22gnu: express: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check".
2020-06-22gnu: youtube-dl: Update to 2020.06.16.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
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