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2022-03-31gnu: Add python-numpy-groupies.Ricardo Wurmus
* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
2022-03-31gnu: Add riscv-pk.Arun Isaac
* gnu/packages/virtualization.scm (riscv-pk): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31gnu: spike: Substitute path to dtc instead of wrapping executables.Arun Isaac
* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary phase. Add a configure-dtc-path phase that substitutes the absolute path to dtc. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31gnu: python-anndata: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.8.0. [arguments]: Remove build phase 'relax-dependency-requirements.
2022-03-31gnu: python-h5py: Update to 3.6.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0. [arguments]: Set HDF5_DIR variable instead of patching files.
2022-03-31gnu: python2-h5py: Detach version and source from python-h5py.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-h5py): Override source and version field. (python-h5py)[properties]: Record python2-variant.
2022-03-30gnu: weechat: Update to 3.5.Efraim Flashner
* gnu/packages/irc.scm (weechat): Update to 3.5. [inputs]: Add zstd:lib.
2022-03-30gnu: msmtp: Update to 1.8.20.Efraim Flashner
* gnu/packages/mail.scm (msmtp): Update to 1.8.20.
2022-03-30gnu: ncdu-2: Update to 2.1.1.Efraim Flashner
* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.1.
2022-03-30gnu: ncdu2: Set upstream name.Efraim Flashner
* gnu/packages/ncdu.scm (ncdu-2)[properties]: New field.
2022-03-30gnu: anonip: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/web.scm (anonip): Update to 1.1.0. [source]: Fetch from git. [arguments]: Run tests with pytest. [native-inputs]: Add python-pytest and python-pytest-cov.
2022-03-30lsof: Prevent mass-rebuild.Mathieu Othacehe
* gnu/packages/lsof.scm (lsof): Set LINUX_CONF_CC variable only when cross-compiling.
2022-03-30gnu: lbzip2: Fix cross-compilation.Brian Kubisiak
* gnu/packages/compression.scm (lbzip2)[arguments]: Search (or native-inputs inputs) for gnulib-tool.py. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-30gnu: lsof: Fix cross-compilation.Brian Kubisiak
* gnu/packages/lsof (lsof)[arguments]: Add LINUX_CONF_CC environment variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29gnu: Mutt: Update to 2.2.2.Leo Famulari
* gnu/packages/mail.scm (mutt): Update to 2.2.2.
2022-03-29gnu: linux-libre 4.9: Update to 4.9.309.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.309. (linux-libre-4.9-pristine-source): Update hash.
2022-03-29gnu: linux-libre 4.14: Update to 4.14.274.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.274. (linux-libre-4.14-pristine-source): Update hash.
2022-03-29gnu: linux-libre 4.19: Update to 4.19.237.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.237. (linux-libre-4.19-pristine-source): Update hash.
2022-03-29gnu: linux-libre 5.4: Update to 5.4.188.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.188. (linux-libre-5.4-pristine-source): Update hash.
2022-03-29gnu: linux-libre 5.10: Update to 5.10.109.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.109. (linux-libre-5.10-pristine-source): Update hash.
2022-03-29gnu: linux-libre 5.15: Update to 5.15.32.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.32. (linux-libre-5.15-pristine-source): Update hash.
2022-03-29gnu: linux-libre 5.16: Update to 5.16.18.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.18. (linux-libre-5.16-pristine-source): Update hash.
2022-03-29gnu: linux-libre 5.17: Update to 5.17.1.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.1. (linux-libre-5.17-pristine-source): Update hash.
2022-03-29gnu: gmid: Update to 1.8.2.cage
* gnu/packages/web.scm (gmid): Update to 1.8.2. [native-inputs]: Remove which. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29gnu: git-annex: Update to 10.20220322.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322. [inputs]: Add ghc-http-client-restricted. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29gnu: Add ghc-http-client-restricted.Kyle Meyer
* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29gnu: ghc-http-client-tls: Update to 0.3.6.1.Kyle Meyer
* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29gnu: ghc-http-client: Update to 0.7.11.Kyle Meyer
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11. [inputs]: Add ghc-iproute. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29gnu: r-signac: Update to 1.6.0-2.458e647.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647. [propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings, r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-03-29gnu: plink-ng: Update to 2.00a3-20220315.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
2022-03-29gnu: Add r-cytobackbone.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-03-29gnu: pigx-sars-cov2-ww: Update to 0.0.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5. [source]: Remove patch. [arguments]: Disable tests. * gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-29gnu: pigx-rnaseq: Update to 0.0.20.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20. [source]: Remove patch. [inputs]: Add megadepth. * gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-29gnu: kpeoplevcard: Use mirror URI.Efraim Flashner
* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI.
2022-03-29gnu: pulseaudio-qt: Use mirror URI.Efraim Flashner
* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde mirror URI.
2022-03-29gnu: neovim: Update to 0.6.1.Luis Henrique Gomes Higino
* gnu/packages/vim.scm (neovim): Update to 0.6.1. Build neovim with LuaJIT in the supported platforms. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29gnu: Add tree-sitter.Luis Henrique Gomes Higino
* gnu/packages/text-editors.scm (tree-sitter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29gnu: Add xfce4-dict.Feng Shu
* gnu/packages/xfce.scm (xfce4-dict): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29gnu: poezio: Update to 0.13.2.jgart
* gnu/packages/messaging.scm (poezio): Update to 0.13.2. [arguments]: Remove trailing boolean and use new style. [inputs]: Remove unused python input. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29gnu: openmpi: Update to 4.1.2Philippe SWARTVAGHER
* gnu/packages/mpi.scm (openmpi): Update to 4.1.2 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29gnu: slurm: Install libpmi2.Ludovic Courtès
* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through. [arguments]: In phase 'install-libpmi', install "contribs/pmi2". [license]: Add 'non-copyleft'.
2022-03-29gnu: mercury: Remove trailing #T from phases and snippet.jgart
* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29gnu: python-livereload: Update to 2.6.3.jgart
* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29gnu: solfege: Remove trailing booleans.jgart
* gnu/packages/music.scm (solfege): Remove trailing booleans. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29gnu: python-port-for: Remove trailing boolean.jgart
* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing boolean from lambda function. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29gnu: dnsmasq: Fix cross-compilation.Brian Kubisiak
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-28gnu: munge: Fix cross-compiling.Efraim Flashner
* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set path to libgcrypt prefix. Add configure flags when cross-compiling to assume support for pipes.
2022-03-28gnu: freeipmi: Fix cross-compiling.Efraim Flashner
* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for /dev/random and /dev/urandom when cross compiling.
2022-03-28gnu: sdsl-lite: Adjust inputs.Efraim Flashner
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move libdivsufsort from here ... [propagated-inputs]: ... to here.
2022-03-28gnu: rdma-core: Fix cross-compiling.Efraim Flashner
* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when cross-compiling to find pkg-config.
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