summary refs log tree commit diff
path: root/gnu
AgeCommit message (Collapse)Author
2022-04-14gnu: r-rhdf5: Update to 2.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
2022-04-14gnu: r-regioner: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
2022-04-14gnu: r-msnbase: Update to 2.20.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
2022-04-14gnu: r-mutationalpatterns: Update to 3.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
2022-04-14gnu: r-limma: Update to 3.50.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
2022-04-14gnu: r-genomicfeatures: Update to 1.46.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
2022-04-14gnu: r-genomeinfodb: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
2022-04-14gnu: r-ensembldb: Update to 2.18.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
2022-04-14gnu: r-biomart: Update to 2.50.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
2022-04-14gnu: r-annotationhub: Update to 3.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
2022-04-14gnu: Add r-aod.Ricardo Wurmus
* gnu/packages/cran.scm (r-aod): New variable.
2022-04-14gnu: r-tricycle: Move out of annotation packages.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the section containing annotation packages.
2022-04-13gnu: gama: Update to 2.18.Efraim Flashner
* gnu/packages/gps.scm (gama): Update to 2.18.
2022-04-13gnu: idris: Fixes test failure.Eric Bavier
* gnu/packages/patches/idris-test-ffi008.patch: New file. * gnu/packages/idris.scm (source): Use it. * gnu/local.mk (dist_patch_DATA): Register it.
2022-04-13gnu: nginx: Update to 1.21.6.Leo Famulari
* gnu/packages/web.scm (nginx): Update to 1.21.6. (nginx-documentation): Update to 1.21.6-2829-1ecf0e0526da.
2022-04-13gnu: Add cl-simple-routes.Foo Chuan Wei
* gnu/packages/lisp-xyz.scm (cl-simple-routes, ecl-simple-routes, sbcl-simple-routes): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-13gnu: awscli: Do not propagate inputs.Ricardo Wurmus
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here.
2022-04-13gnu: awscli: Use PyYAML 6.Ricardo Wurmus
This should be fine because all uses of yaml.load supply the now mandatory loader argument. * gnu/packages/python-web.scm (awscli)[arguments]: Add phase 'use-recent-pyyaml. [propagated-inputs]: Replace python-pyyaml-for-awscli with python-pyyaml.
2022-04-12gnu: wpewebkit: Update to 2.36.0.Maxim Cournoyer
* gnu/packages/webkit.scm (%webkit-version): New variable. (wpewebkit): Update to 2.36.0, rewriting package to inherit from webkitgtk. (webkitgtk)[source]: Use %webkit-version, and adjust definition to match that of wpewebkit.
2022-04-12gnu: webkitgtk: Update to 2.36.0 and enable extra features.Maxim Cournoyer
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0. [source]: Remove the webkitgtk-bind-all-fonts.patch and webkitgtk-canonicalize-paths.patch patches. [arguments]: Use gexp. [tests?]: Update comment. [build-type]: Add explanatory comment. [configure-flags]: Enable gamepad support, remove nonexistent USE_SYSTEMD option and enable mini-browser. [phases]{do-not-disable-new-dtags}: New phase. {help-cmake-find-elogind}: Likewise. {patch-gtk-doc-scan}: Simplify to avoid for-each. Locate docbookx.dtd via search-input-file. {embed-absolute-wpebackend-reference}: Use search-input-file. [native-inputs]: Use new style. [inputs]: Likewise. Add elogind and libmanette. [description]: Adjust indentation. (webkitgtk-with-libsoup2): Re-format comment, fixing spacing. [configure-flags]: Use gexp. [propagated-inputs]: Use modify-inputs to replace libsoup with libsoup-minimal-2. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file. * gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise. * gnu/local.mk: De-register them.
2022-04-12gnu: woff2: Propagate brotli.Maxim Cournoyer
* gnu/packages/fontutils.scm (woff2)[phases]: Delete trailing #t. [inputs]: Move brotli to ... [propagated-inputs]: ... here.
2022-04-12gnu: linux-libre 4.9: Update to 4.9.310.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.310. (linux-libre-4.9-pristine-source): Update hash.
2022-04-12gnu: Add smtpmail.terramorpha
* gnu/packages/mail.scm (smtpmail): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12gnu: Add librseq.Olivier Dion
* gnu/packages/engineering.scm (librseq): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12shepherd: Add #:supplementary-groups.Leo Nikkilä
To support the argument introduced in Shepherd 0.9.0 when defining container-bound services. * gnu/build/shepherd.scm (exec-command*) (make-forkexec-constructor/container): Add '#:supplementary-groups'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12home: shepherd: Prevent launching the second instance.Andrew Tropin
Fixes <https://issues.guix.gnu.org/54545>. * gnu/home/services/shepherd.scm (launch-shepherd-gexp): Launch shepherd if and only if its socket file does not already exist. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-12gnu: python-moto: Update to 3.1.4.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-moto): Update to 3.1.4. [arguments]: Adjust disabled tests. [native-inputs]: Remove python-parameterized; add python-graphql-core. [propagated-inputs]: Remove python-boto, python-idna, python-mock, and python-six; add python-importlib-metadata and python-markupsafe.
2022-04-12gnu: awscli: Use older version of botocore.Ricardo Wurmus
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace python-botocore with python-botocore-for-awscli.
2022-04-12gnu: python-botocore: Update to 1.24.35.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.24.35.
2022-04-12gnu: python-boto3: Update to 1.21.35.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-boto3): Update to 1.21.35. [arguments]: Override 'check phase.
2022-04-12gnu: Add python-botocore-for-awscli.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): New variable.
2022-04-12gnu: awscli: Use older pyyaml.Ricardo Wurmus
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace python-pyyaml with python-pyyaml-for-awscli.
2022-04-12gnu: Add python-pyyaml-for-awscli.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): New variable.
2022-04-12services: Replace murmur-service-type with mumble-server-service-type.Liliana Marie Prikler
* gnu/services/telephony.scm (murmur-configuration, make-murmur-configuration) (murmur-configuration?, murmur-configuration-package) (murmur-configuration-user, murmur-configuration-group) (murmur-configuration-port, murmur-configuration-welcome-text) (murmur-configuration-server-password) (murmur-configuration-max-users) (murmur-configuration-max-user-bandwidth) (murmur-configuration-database-file) (murmur-configuration-log-file, murmur-configuration-pid-file) (murmur-configuration-autoban-attempts) (murmur-configuration-autoban-timeframe) (murmur-configuration-autoban-time) (murmur-configuration-opus-threshold) (murmur-configuration-channel-nesting-limit) (murmur-configuration-channelname-regex) (murmur-configuration-username-regex) (murmur-configuration-test-message-length) (murmur-configuration-image-message-length) (murmur-configuration-cert-required?) (murmur-configuration-remember-channel?) (murmur-configuration-allow-html?) (murmur-configuration-allow-ping?) (murmur-configuration-bonjour?) (murmur-configuration-send-version?) (murmur-configuration-log-days) (murmur-configuration-obfuscate-ips?) (murmur-configuration-ssl-cert murmur-configuration-ssl-key) (murmur-configuration-ssl-dh-params murmur-configuration-ssl-ciphers) (murmur-configuration-public-registration) (murmur-configuration-file) (murmur-public-registration-configuration) (make-murmur-public-registration-configuration) (murmur-public-registration-configuration?) (murmur-public-registration-configuration-name) (murmur-public-registration-configuration-url) (murmur-public-registration-configuration-password) (murmur-public-registration-configuration-hostname) (murmur-service-type): Add deprecation alias and rename to ... (mumble-server-configuration, make-mumble-server-configuration) (mumble-server-configuration?, mumble-server-configuration-package) (mumble-server-configuration-user, mumble-server-configuration-group) (mumble-server-configuration-port, mumble-server-configuration-welcome-text) (mumble-server-configuration-server-password) (mumble-server-configuration-max-users) (mumble-server-configuration-max-user-bandwidth) (mumble-server-configuration-database-file) (mumble-server-configuration-log-file, mumble-server-configuration-pid-file) (mumble-server-configuration-autoban-attempts) (mumble-server-configuration-autoban-timeframe) (mumble-server-configuration-autoban-time) (mumble-server-configuration-opus-threshold) (mumble-server-configuration-channel-nesting-limit) (mumble-server-configuration-channelname-regex) (mumble-server-configuration-username-regex) (mumble-server-configuration-test-message-length) (mumble-server-configuration-image-message-length) (mumble-server-configuration-cert-required?) (mumble-server-configuration-remember-channel?) (mumble-server-configuration-allow-html?) (mumble-server-configuration-allow-ping?) (mumble-server-configuration-bonjour?) (mumble-server-configuration-send-version?) (mumble-server-configuration-log-days) (mumble-server-configuration-obfuscate-ips?) (mumble-server-configuration-ssl-cert mumble-server-configuration-ssl-key) (mumble-server-configuration-ssl-dh-params) (mumble-server-configuration-ssl-ciphers) (mumble-server-configuration-public-registration) (mumble-server-configuration-file) (mumble-server-public-registration-configuration) (make-mumble-server-public-registration-configuration) (mumble-server-public-registration-configuration?) (mumble-server-public-registration-configuration-name) (mumble-server-public-registration-configuration-url) (mumble-server-public-registration-configuration-password) (mumble-server-public-registration-configuration-hostname) (mumble-server-service-type): ... these. * doc/guix.texi ("Murmur (VoIP server)"): Rename to ... ("Mumble server"): ... this. Adjust documentation accordingly.
2022-04-12gnu: libressl: Update to 3.3.6.Liliana Marie Prikler
* gnu/packages/tls.scm (libressl): Update to 3.3.6.
2022-04-12gnu: games: Add robotfindskitten.Roman Riabenko
* gnu/packages/games.scm (robotfindskitten): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-04-12gnu: r-rbowtie: Fix build on architectures other than x86_64.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt on systems other than x86_64.
2022-04-12gnu: r-rlrsim: Update to 3.1-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlrsim): Update to 3.1-8.
2022-04-12gnu: r-norm: Update to 1.0-10.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-norm): Update to 1.0-10.0.
2022-04-12gnu: r-puniform: Update to 0.2.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.5.
2022-04-12gnu: r-cairo: Update to 1.5-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-15.
2022-04-12gnu: r-tsne: Update to 0.1-3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tsne): Update to 0.1-3.1.
2022-04-12gnu: r-lme4: Update to 1.1-29.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-29.
2022-04-12gnu: r-rcppeigen: Update to 0.3.3.9.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.9.2.
2022-04-12gnu: r-robustbase: Update to 0.95-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robustbase): Update to 0.95-0.
2022-04-12gnu: r-deoptimr: Update to 1.0-11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-11.
2022-04-12gnu: r-sfsmisc: Update to 1.1-13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-13.
2022-04-12gnu: r-dt: Update to 0.22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.22.
2022-04-12gnu: r-segmented: Update to 1.4-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-segmented): Update to 1.4-1.
2022-04-12gnu: r-rsqlite: Update to 2.2.12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.12.
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-12-22 09:22:33 +0000