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2021-01-17gnu: libhandy: Update to 1.0.3.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libhandy): Update to 1.0.3.
2021-01-17gnu: php-fpm: Ensure no duplicate group.Julien Lepiller
* gnu/services/web.scm (php-fpm-accounts): Ensure `php-fpm` group is not duplicated. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-01-17services: cups: reuse lp from %base-groups.Leo Prikler
* gnu/services/cups.scm (%cups-accounts): Try to reuse lp from %base-groups.
2021-01-17gnu: grub: Use installed unicode font.Stefan
* gnu/bootloader/grub.scm (setup-gfxterm): Remove parameter font-file. Refer to the installed font in /boot, not in the store. (font-file): Delete obsolete function. (install-grub): When populating a disk-image, install the unicode font, too. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-17gnu: sbcl-cffi: Update to 0.23.0.Aurora
* gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.23.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-01-17gnu: freebayes: Update to 1.3.3.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase.
2021-01-17gnu: multichoose: Install header files.Efraim Flashner
* gnu/packages/bioinformatics.scm (multichoose)[arguments]: Adjust 'install phase to also install header files.
2021-01-17gnu: filevercmp: Install header files.Efraim Flashner
* gnu/packages/bioinformatics.scm (filevercmp)[arguments]: Adjust 'install phase to install header files.
2021-01-17gnu: Add simde.Efraim Flashner
* gnu/packages/assembly.scm (simde): New variable.
2021-01-17gnu: rtl-433: Update to 20.11.Guillaume Le Vaillant
* gnu/packages/radio.scm (rtl-433): Update to 20.11.
2021-01-17gnu: gqrx: Update to 2.14.4.Guillaume Le Vaillant
* gnu/packages/radio.scm (gqrx): Update to 2.14.4.
2021-01-17gnu: abcl: Update to 1.8.0.Vincent Legoll
* gnu/packages/java.scm (abcl): Update to 1.8.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-01-17image: Rename "raw" image-type to "efi-raw".Mathieu Othacehe
* gnu/system/image.scm (raw-image-type): Rename to "efi-raw-image-type". * guix/scripts/system.scm (%default-options): Adapt accordingly. * doc/guix.texi: Ditto. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-01-17gnu: Add buildapp.Sharlatan Hellseher
* gnu/packages/lisp.scm (buildapp): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-01-17gnu: gama: Update to 2.13.Efraim Flashner
* gnu/packages/gps.scm (gama): Update to 2.13.
2021-01-17gnu: youtube-dl: Update to 2021.01.16.Oleg Pykhalov
* gnu/packages/video.scm (youtube-dl): Update to 2021.01.16.
2021-01-16gnu: Add markets.Alexandros Theodotou
* gnu/packages/gnome-xyz.scm (markets): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: python-pep517: Update to 0.9.1.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-pep517): Update to 0.9.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16services: openntpd: Remove support for deprecated "-s" option.Simon South
* gnu/services/networking.scm (openntpd-configuration): Remove "allow-large-adjustment?" field. (openntpd-shepherd-service): Remove use of "allow-large-adjustment?" configuration field and "-s" daemon option. * tests/networking.scm (%openntpd-conf-sample): Remove "allow-large-adjustment?" field. * doc/guix.texi (Networking Services)[openntpd-service-type]: Remove "allow-large-adjustment?" field from sample configuration. [openntpd-configuration]: Remove description of "allow-large-adjustment?" field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: xfce4-whiskermenu-plugin: Update to 2.5.2.Michael Rohleder
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.5.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: garcon: Update to 4.16.1.Michael Rohleder
* gnu/packages/xfce.scm (garcon): Update to 4.16.1. [native-inputs]: Add gobject-introspection, sorted alphabeticaly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: xfce4-cpufreq-plugin: Update to 1.2.3.Michael Rohleder
* gnu/packages/xfce.scm (xfce4-cpufreq-plugin): Update to 1.2.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: xfconf: Install bash completion.Michael Rohleder
* gnu/packages/xfce.scm (xfconf)[arguments]: Add install-shell-completions phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: xfwm4: Update to 4.16.1.Michael Rohleder
* gnu/packages/xfce.scm (xfwm4): Update to 4.16.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: thunar: Update to 4.16.2.Michael Rohleder
* gnu/packages/xfce.scm (thunar): Update to 4.16.2. [inputs]: Add gobject-introspection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: mkvtoolnix: Update to 52.0.0.Michael Rohleder
* gnu/packages/video.scm (mkvtoolnix): Update to 52.0.0. [inputs]: Add libdvdread to support dvd chapter. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: diffoscope: Update to 164.Vincent Legoll
* gnu/packages/diffoscope.scm (diffoscope): Update to 164. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16services: qemu-binfmt: 'guix-support?' defaults to #t.Stefan
* gnu/services/virtualization.scm (qemu-binfmt-service-type)[guix-support?]: Change the default from #f to #t. * doc/guix.texi (Transparent Emulation with QEMU): Change the default of ‘guix-support?’ from #f to #t. Describe the implication of setting it to #f. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-01-16gnu: blender: Update to 2.91.0.Christopher Lemmer Webber
* gnu/packages/graphics.scm (blender): Update to 2.91.0. [inputs]: Add embree. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-01-16gnu: Add embree.Christopher Lemmer Webber
* gnu/packages/graphics.scm (embree): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-01-16Revert "gnu: llvm: Update to 11.0.1."Tobias Geerinckx-Rice
This reverts commit 9b415c0b36c885e7899c45617a8c4e64118a6379, which reportedly breaks[0] rust@1.47.0, rust-1.48.0 and rust-1.49.0. [0]: http://issues.guix.gnu.org/45909
2021-01-16gnu: gnome-font-viewer: Fix thumbnail generation.Christopher Baines
Previously, thumbnail generation failed, as the gnome-thumbnail-font command couldn't be found. Using an absolute filename in the .thumbnailer file fixes this. Cached failures within .cache/thumbnails/fail/ or similar may need removing before the effect of this change can be seen. * gnu/packages/gnome.scm (gnome-font-viewer)[arguments]: Add patch-thumbnailer phase.
2021-01-16gnu: ruby-method-source: Remove unnecessary dependency on git.Christopher Baines
* gnu/packages/ruby.scm (ruby-method-source)[arguments]: Patch Rakefile to use find rather than git. [native-inputs]: Remove git.
2021-01-16gnu: Add lrzsz.Danny Milosavljevic
* gnu/packages/admin.scm (lrzsz): New variable.
2021-01-15gnu: emacs-dired-hacks: Update to 0.0.1-3.d1a2bda.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-3.d1a2bda. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-01-15gnu: emacs-calibredb: Patch paths to calibre programs.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-calibredb): Patch paths to calibre programs. [arguments]: Add phase patch-paths. [inputs]: Add calibre. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-01-15gnu: Add emacs-crdt.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-crdt): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-01-15gnu: emacs-helm-sly: Update to 0.6.0.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-sly): Update to 0.6.0.
2021-01-15gnu: sbcl-postmodern: Update to 1.32.6.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-postmodern): Update to 1.32.6. [inputs]: Add cl-base64, cl-unicode, ironclad, local-time and uax-15. [arguments]: Add cl-postgres, s-sql and simple-date to 'asd-systems'. (ecl-postmodern)[arguments]: Add cl-postgres, s-sql and simple-date to 'asd-systems'. Update the 'fix-build' phase. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-01-14gnu: facter: Update to 4.0.48.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (facter): Update to 4.0.48.
2021-01-14gnu: kyotocabinet: Update to 1.2.79.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.79.
2021-01-14gnu: gptfdisk: Update to 1.0.6.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.6.
2021-01-14gnu: busybox: Update to 1.32.1.Tobias Geerinckx-Rice
* gnu/packages/busybox.scm (busybox): Update to 1.32.1.
2021-01-14services: hurd-vm: Respect hurd-vm-configuration's disk-size.Jan (janneke) Nieuwenhuizen
This is a follow-up to commit 859b362f81598830d7ff276b96a8724aee3c4db7. * gnu/services/virtualization.scm (hurd-vm-disk-image): Use diks-size from config to set image's size.
2021-01-14gnu: vcflib: Update to 1.0.2.Efraim Flashner
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2. [source]: Download using git-fetch. Remove patch. Update snippet to use packaged libraries. [build-system]: Switch to cmake-build-system. [inputs]: Add bzip2. [native-inputs]: Add package-source of fsom. [arguments]: Delete custom 'set-flags, 'install phases. Don't delete 'configure phase. Adjust 'unpack-submodule-sources phase. * gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-14gnu: sambamba Update to 0.8.0.Efraim Flashner
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.8.0. [source, home-page]: Update to new upstream URI. [arguments]: Shorten 'fix-ldc-version phase. Remove 'place-biod-and-undead phase. Update 'unbundle-prerequisites and 'insatll phases. [native-inputs]: Remove rdmd, biod. Move ldc ... [inputs]: ... to here. Add zlib. (htslib-for-sambamba): Remove variable.
2021-01-14gnu: gemma: Enable tests.Efraim Flashner
* gnu/packages/bioinformatics.scm (gemma)[source]: Add snippet to remove bundled sources. [native-inputs]: Add catch-framework2-1, perl, shunit2, which. [arguments]: Don't disable tests. Override 'check phase.
2021-01-14gnu: Add shunit2.Efraim Flashner
* gnu/packages/check.scm (shunit2): New variable.
2021-01-14gnu: gemma: Add Texinfo markup.Efraim Flashner
* gnu/packages/bioinformatics.scm (gemma)[description]: Use Texinfo markup.
2021-01-14gnu: gemma: Update to 0.98.3.Efraim Flashner
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.3. [source, home-page]: Update to new upstream URI. [inputs]: Remove eigen, gfortran, lapack. [arguments]: Remove make-flags. Remove 'find-eigen phase. Rename 'bin-mkdir phase to 'prepare-build and substitute openblas include directory.
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