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2017-05-22gnu: clojure: Move below bootstrap packages.Ricardo Wurmus
* gnu/packages/java.scm (clojure): Move package.
2017-05-22gnu: java-swt: Move below the bootstrap packages.Ricardo Wurmus
* gnu/packages/java.scm (java-swt): Move the package.
2017-05-22gnu: icedtea-7: Use icedtea-6 for bootstrapping.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link with GCJ libs. [arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add GCJ headers to CPATH in build phase "set-additional-paths". [native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap. Remove autoconf and automake. (icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not "gcj".
2017-05-22gnu: Add icedtea-6.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-6): New variable.
2017-05-22gnu: Add ecj-javac-on-jamvm-wrapper-final.Ricardo Wurmus
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable.
2017-05-22gnu: Add jamvm.Ricardo Wurmus
* gnu/packages/java.scm (jamvm): New variable.
2017-05-22gnu: Add classpath-devel.Ricardo Wurmus
* gnu/packages/java.scm (classpath-devel): New variable.
2017-05-22gnu: Add ecj-javac-on-jamvm-wrapper.Ricardo Wurmus
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable.
2017-05-22gnu: Add classpath-jamvm-wrappers.Ricardo Wurmus
* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable.
2017-05-22gnu: Add jamvm-bootstrap.Ricardo Wurmus
* gnu/packages/java.scm (jamvm-bootstrap): New variable.
2017-05-22gnu: Add classpath.Ricardo Wurmus
* gnu/packages/java.scm (classpath): New variable.
2017-05-22gnu: Add ecj-javac-wrapper.Ricardo Wurmus
* gnu/packages/java.scm (ecj-javac-wrapper): New variable.
2017-05-22gnu: Add ecj-bootstrap.Ricardo Wurmus
* gnu/packages/java.scm (ecj-bootstrap): New variable.
2017-05-22gnu: Add ant-bootstrap.Ricardo Wurmus
* gnu/packages/java.scm (ant-bootstrap): New variable.
2017-05-22gnu: Add sablevm.Ricardo Wurmus
* gnu/packages/java.scm (sablevm): New variable.
2017-05-22gnu: Add sablevm-classpath.Ricardo Wurmus
* gnu/packages/java.scm (sablevm-classpath): New variable.
2017-05-22gnu: Add jikes.Ricardo Wurmus
* gnu/packages/java.scm (jikes): New variable.
2017-05-22gnu: Add r-edaseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
2017-05-22gnu: Add r-deseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
2017-05-22gnu: Add r-aroma-light.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
2017-05-22Merge branch 'version-0.13.0'Marius Bakke
2017-05-22gnu: vte-ng: Update to 0.48.3.a.Marius Bakke
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
2017-05-22gnu: gexiv2: Update to 0.10.6.Marius Bakke
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
2017-05-22gnu: dconf-editor: Update to 3.22.3.Marius Bakke
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
2017-05-22gnu: aisleriot: Update to 3.22.2.Marius Bakke
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
2017-05-22gnu: vte: Update to 0.48.3.Marius Bakke
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
2017-05-22gnu: fraggenescan: Update to 1.30.Ben Woodcroft
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30. [arguments]: Update patching of paths, install procedure. Add new test case.
2017-05-22gnu: roary: Update to 3.8.2.Ben Woodcroft
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
2017-05-22gnu: taxtastic: Update to 0.6.4.Ben Woodcroft
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4. [source]: Use PyPI URI.
2017-05-22gnu: r-mutationalpatterns: Update to 1.2.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
2017-05-21bootloader: extlinux: Add a warning message on top of generated conf file.Mathieu Othacehe
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Warn users about the fact that the configuration file is automatically generated.
2017-05-21gnu: v4l-utils: Update to 1.12.5.Marius Bakke
* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
2017-05-21gnu: x265: Update to 2.4.Marius Bakke
* gnu/packages/video.scm (x265): Update to 2.4.
2017-05-21gnu: vlc: Update to 2.2.5.1.Marius Bakke
* gnu/packages/video.scm (vlc): Update to 2.2.5.1. [source]: Remove obsolete snippet.
2017-05-21gnu: libaacs: Update to 0.9.0.Marius Bakke
* gnu/packages/video.scm (libaacs): Update to 0.9.0.
2017-05-21gnu: diamond: Update to 0.9.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0. [license]: Change to AGPL3+.
2017-05-21gnu: guix: Update to a6d728b.Ludovic Courtès
2017-05-21gnu: guix: Update to 0.13.0.Ludovic Courtès
2017-05-21gnu: fasttree: Update to 2.1.10.Ben Woodcroft
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
2017-05-21gnu: python-biom-format: Update to 2.1.6.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6. [propagated-inputs]: Add python-pandas.
2017-05-21gnu: python-future: Update to 0.16.0.Ben Woodcroft
* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21gnu: ccid: Update to 1.4.27.Marius Bakke
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21gnu: fio: Update to 2.20.Marius Bakke
* gnu/packages/benchmark.scm (fio): Update to 2.20. [arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21gnu: nano: Update to 2.8.4.Marius Bakke
* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21gnu: vim: Update to 8.0.0600.Marius Bakke
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21gnu: vim-full: Disable failing test.Marius Bakke
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21tests: ssh: Use 'guile2.0-ssh'.Ludovic Courtès
Fixes a regression introduced in 4d8806c3d662c74e6d48d0f0d6ce423fce9a3a08. * gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH.
2017-05-21gnu: linux-libre: Update to 4.11.2.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2. (%linux-libre-hash): Update hash.
2017-05-21gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.Mark H Weaver
This removes support for the "shared memory communications over RDMA" (SMC-R) networking protocol, which was added in 4.11 without the knowledge of the RDMA maintainers, and which is thought to contain significant security flaws. For details, see <https://lwn.net/Articles/723081> and <https://lwn.net/Articles/723070>. * gnu/packages/aux-files/linux-libre/4.11-x86_64.conf, gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC. 723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21gnu: linux-libre@4.9: Update to 4.9.29.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
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