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2019-12-19gnu: Add python-ppft.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-ppft): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-19gnu: python-multiprocess: Update to 0.70.9.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-multiprocess): Update to 0.70.9. [arguments]: Add phase "disable-broken-tests" and run tests after installation. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2019-12-19gnu: python-dill: Update to 0.3.1.1.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.1.1. [arguments]: Enable tests. [native-inputs]: Add python-nose. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-18gnu: libdbi-drivers: Adapt to multiple-output MariaDB.Marius Bakke
* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable. (libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB. Remove MARIADB. [native-inputs]: Add MARIADB/FIXED-INSTALL-DB. [arguments]: Adjust accordingly.
2019-12-18gexp: Allow character literals in GEXP->SEXP.Marius Bakke
Fixes <https://bugs.gnu.org/38628>. * tests/gexp.scm ("lower-gexp, character literal"): New test. * guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types. * guix/repl.scm (self-quoting?): Likewise. * gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
2019-12-18gnu: darktable: Update to 2.6.3.Marius Bakke
* gnu/packages/photo.scm (darktable): Update to 2.6.3.
2019-12-18gnu: darktable: Remove redundant inputs.Marius Bakke
* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
2019-12-18gnu: darktable: Fix build failure.Marius Bakke
* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from #:make-flags to a phase, so the GETENV call returns useful data.
2019-12-18gnu: Remove uses of deprecated Qemu network configuration.Marius Bakke
* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from ARCH-SPECIFIC-FLAGS to the Qemu command line. Use the "-nic" option of Qemu instead of "-device" and "-net". * gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command. (virtual-machine-compiler): Use "-nic user,..." instead of "-net". * doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix in a VM): Do the same for examples.
2019-12-18gnu: linux-libre: Update to 5.3.18.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18. (linux-libre-5.3-pristine-source): Update hash.
2019-12-18gnu: linux-libre: Update deblob scripts.Mark H Weaver
* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90. (deblob-scripts-4.14): Update to 4.14.159. (deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts themselves have not changed.
2019-12-18gnu: Add r-biodist.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18gnu: Add r-biocworkflowtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18gnu: Add r-biocset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18gnu: Add r-biocpkgtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18gnu: Add r-biocor.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18gnu: Add r-bioconcotk.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18gnu: Add r-multiassayexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18gnu: Add r-experimenthub.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18gnu: Add r-biocgraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18gnu: Add r-bioccasestudies.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18gnu: Add r-ebarrays.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18gnu: Add r-reactomepa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18gnu: Add r-graphite.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18gnu: Add r-influencer.Ricardo Wurmus
* gnu/packages/cran.scm (r-influencer): New variable.
2019-12-18gnu: Add r-curatedtcgadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18gnu: Add r-reactome-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18gnu: libmicrohttpd: Update to 0.9.69.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18gnu: cmst: Update to 2019.01.13.Efraim Flashner
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18gnu: python-ecdsa: Actually run the test suite.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace 'check phase. [native-inputs]: Add python-pytest.
2019-12-18gnu: python-ecdsa: Update to 0.14.1.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1. [inputs]: Move openssl ... [native-inputs]: ... to here. [propagated-inputs]: Add python-six.
2019-12-17gnu: linux-libre: Update to 5.3.17.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17. (linux-libre-5.3-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.19: Update to 4.19.90.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90. (linux-libre-4.19-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.14: Update to 4.14.159.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159. (linux-libre-4.14-pristine-source): Update hash.
2019-12-17gnu: Add r-biobroom.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17gnu: Add r-bioassayr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17gnu: Add r-chemminer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17gnu: Add r-bigpint.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17gnu: Add r-bigmemoryextras.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17gnu: Add r-biggr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17gnu: Add r-hyperdraw.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17gnu: Add r-hypergraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17gnu: Add r-rsbml.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17gnu: Add r-bifet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17gnu: Add r-bicare.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17gnu: Add r-bhc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17gnu: Add r-bgx.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17gnu: Add r-bgmix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17gnu: Add r-rsvg.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): New variable.
2019-12-17gnu: Add r-shinycssloaders.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
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