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2017-12-19Merge branch 'master' into core-updatesMarius Bakke
2017-12-19gnu: termite: Update to 13.Marius Bakke
* gnu/packages/terminals.scm (termite): Update to 13.
2017-12-19gnu: pcsc-lite: Update to 1.8.23.Marius Bakke
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]<#:configure-flags>: Add "--disable-libsystemd". [license]: Adjust to removed sd-daemon files.
2017-12-19gnu: qemu: Update to 2.10.2.Marius Bakke
* gnu/packages/patches/qemu-CVE-2017-15118.patch, gnu/packages/patches/qemu-CVE-2017-15119.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.10.2. [source](patches): Remove obsolete.
2017-12-19gnu: libdrm: Update to 2.4.89.Marius Bakke
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.89.
2017-12-18gnu: libjpeg-turbo: Update to 1.5.3.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
2017-12-18gnu: libsodium: Update to 1.0.16.Marius Bakke
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
2017-12-18gnu: expect: Update to 5.45.3.Marius Bakke
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
2017-12-18gnu: deutex: Update to 5.1.0.Kei Kebreau
* gnu/packages/games.scm (deutex): Update to 5.1.0.
2017-12-18gnu: emacspeak: Update to 47.0.Kei Kebreau
* gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable.
2017-12-18gnu: rsync: Patch CVE-2017-{16548,17433,17434}.Efraim Flashner
* gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18gnu: psm: Update home page URL.Ludovic Courtès
* gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it.
2017-12-18gnu: Fix ambiguous 'zip' reference.Ludovic Courtès
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
2017-12-18system: examples: Add a template for BeagleBone Black.Mathieu Othacehe
* gnu/system/examples/beaglebone-black.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * gnu/system/install.scm (/etc/configuration-files): Add it.
2017-12-18gnu: claws-mail: Update to 3.16.0.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
2017-12-18services: nginx: Allow to add raw content to the server blocks.Clément Lassieur
* doc/guix.texi (Web Services): Document 'raw-content'. * gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field. (emit-nginx-server-config): Add it.
2017-12-18services: nginx: Replace 'http-port' and 'https-port' with 'listen'.Clément Lassieur
* doc/guix.texi (Web Services, Version Control Services): Update accordingly. * gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise. * gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise. * gnu/services/web.scm (<nginx-server-configuration>, emit-nginx-server-config): Likewise. * gnu/tests/version-control.scm (%cgit-configuration-nginx, %git-nginx-configuration): Likewise. * gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
2017-12-18gnu: r-seurat: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica.
2017-12-18gnu: Add r-diffusionmap.Ricardo Wurmus
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18gnu: Add r-ggjoy.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18gnu: Add r-ggridges.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18gnu: Add r-scatterplot3d.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18gnu: Add r-sdmtools.Ricardo Wurmus
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18gnu: Add r-dtw.Ricardo Wurmus
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18gnu: Add r-ica.Ricardo Wurmus
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18gnu: r-seurat: Fix ModularityOptimizer.jar.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest.
2017-12-18gnu: qmidiarp: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
2017-12-18gnu: Add noise-repellent.Ricardo Wurmus
* gnu/packages/audio.scm (noise-repellent): New variable.
2017-12-18gnu: Add aj-snapshot.Ricardo Wurmus
* gnu/packages/music.scm (aj-snapshot): New variable.
2017-12-18gnu: Add jack-capture.Ricardo Wurmus
* gnu/packages/music.scm (jack-capture): New variable.
2017-12-18gnu: Add qjackrcd.Ricardo Wurmus
* gnu/packages/audio.scm (qjackrcd): New variable.
2017-12-18gnu: Add whysynth.Ricardo Wurmus
* gnu/packages/music.scm (whysynth): New variable.
2017-12-18gnu: Add sonivox-eas.Ricardo Wurmus
* gnu/packages/music.scm (sonivox-eas): New variable.
2017-12-18gnu: ncurses: Fix cross-compilation.Ludovic Courtès
This fixes a regression introduced in 667082d59104d4b964dce878f5e8c0f8ad1be958 whereby cross-compiling ncurses would fail. * gnu/packages/ncurses.scm (ncurses)[arguments]: In CONFIGURE-PHASE, get "rollup-patch" from NATIVE-INPUTS when cross-compiling.
2017-12-18vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.Leo Famulari
* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci. * gnu/system/vm.scm (common-qemu-options): Likewise.
2017-12-17gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].Mark H Weaver
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n. (openssl-1.0.2m): Replace with ... (openssl-1.0.2n): ... this updated version. Update comment.
2017-12-18gnu: retroarch: Enable Vulkan support.Rutger Helling
* gnu/packages/games.scm (retroarch)[arguments]: Hard-code the path to libvulkan.so. [inputs]: Add vulkan-icd-loader. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: vulkan: Add vulkan-icd-loader.Rutger Helling
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: vulkan: Add glslang.Rutger Helling
* gnu/packages/vulkan.scm (glslang): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: vulkan: Add spirv-tools.Rutger Helling
* gnu/packages/vulkan.scm (spirv-tools): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: vulkan: Add spirv-headers.Rutger Helling
* gnu/packages/vulkan.scm: Create file. (spirv-headers): New variable. * gnu/local.mk: Add vulkan.scm. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: mesa: Enable Vulkan drivers for Intel and Radeon.Rutger Helling
* gnu/packages/gl.scm (mesa)[arguments]: Add "--with-vulkan-drivers=intel,radeon" to configure-flags for x86_64-linux. [synopsis]: Mention Vulkan. [description]: Mention Vulkan. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-18gnu: librsvg: Update to 2.40.20.Marius Bakke
* gnu/packages/gnome.scm (librsvg): Update to 2.40.20.
2017-12-18gnu: pulseaudio: Use 'modify-phases' syntax.Marius Bakke
* gnu/packages/pulseaudio.scm (pulseaudio)[arguments]: Use 'modify-phases'.
2017-12-18gnu: pulseaudio: Update to 11.1.Marius Bakke
* gnu/packages/pulseaudio.scm (pulseaudio): Update to 11.1.
2017-12-18gnu: ftgl: Add missing dependency on pkg-config.Marius Bakke
* gnu/packages/gl.scm (ftgl)[native-inputs]: Add PKG-CONFIG.
2017-12-18gnu: mesa: Update to 17.2.7.Marius Bakke
* gnu/packages/gl.scm (mesa): Update to 17.2.7.
2017-12-17gnu: Add mod-wsgi.Christopher Baines
* gnu/packages/web.scm (mod-wsgi): New variable.
2017-12-17gnu: system: vm: Use loose cache for 9p file system.Christopher Baines
This improves the performance of the shared store for operations involving lots of files, e.g. searching through the store. * gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
2017-12-17gnu: grammalecte: Fix 'license' field.Ludovic Courtès
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to 'gpl3+'.
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