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2020-08-23gnu: emacs-org-re-reveal: Update to 3.1.0.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.1.0.
2020-08-23gnu: python-rpy2: Update to 3.3.5.Efraim Flashner
* gnu/packages/statistics.scm (python-rpy2): Update to 3.3.5. [source]: Add patches to fix test failures. [arguments]: Adjust custom 'check phase.
2020-08-23gnu: net-snmp: Update to 5.9 [fixes CVE-2019-20892].Tobias Geerinckx-Rice
* gnu/packages/networking.scm (net-snmp): Update to 5.9. [inputs]: Add ncurses. [native-inputs]: Add pkg-config.
2020-08-22gnu: sameboy: Update to 0.13.6.Jakub Kądziołka
* gnu/packages/emulators.scm (sameboy): Update to 0.13.6.
2020-08-22gnu: lesspipe: Patch paths to inputs.Michael Rohleder
* gnu/packages/less.scm (lesspipe)[arguments]: Add phase to patch paths to tput and file. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: fc-host-tools: Update to 13.Danny Milosavljevic
* gnu/packages/embedded.scm (fc-host-tools): Update to 13. [description]: Modify.
2020-08-22gnu: Add sbcl-livesupport.Adam Kandur
* gnu/packages/lisp-xyz.scm (sbcl-livesupport, cl-livesupport, ecl-livesupport): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: lxqt: Enable keyboard shortcuts.Timotej Lazar
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Add lxqt-globalkeys. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: piper: Update to 0.5.1. Disable broken tests.Brendan Tildesley
* gnu/packages/gnome.scm (piper): Update to 0.5.1. Disable tests. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: libratbag: Update to 0.14.Brendan Tildesley
* gnu/packages/gnome.scm (libratbag): Update to 0.14. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: Add fullswof-2d.Paul Garlick
* gnu/packages/simulation.scm (fullswof-2d): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: Add rtaudio.Vinicius Monego
* gnu/packages/audio.scm (rtaudio): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: Add dosage.Hendursaga
* gnu/packages/python-xyz.scm (dosage): New variable.
2020-08-22gnu: Add nicotine.Martin Becze
* gnu/packages/nicotine.scm (nicotine): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-08-22gnu: emacs-epkg: Update to 3.2.2.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.2.2.
2020-08-22gnu: jekyll: Loosen the requirement for kramdown.Michael Rohleder
* gnu/packages/ruby.scm (jekyll): Loosen the requirement for kramdown. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-08-21gnu: isc-dhcp: Update bundled BIND to 9.11.22 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-8617, CVE-2020-8619, CVE-2020-8622, CVE-2020-8623, and CVE-2020-8624. * gnu/packages/admin.scm (isc-dhcp): Update bundled BIND to 9.11.22.
2020-08-21gnu: linux-libre@4.9: Update to 4.9.233.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.233. (linux-libre-4.9-pristine-source): Update hash. (deblob-scripts-4.9): Update to 4.9.232.
2020-08-21gnu: linux-libre@4.4: Update to 4.4.233.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.233. (linux-libre-4.4-pristine-source): Update hash. (deblob-scripts-4.4): Update to 4.4.232.
2020-08-21gnu: linux-libre: Update to 5.8.3.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.3. (linux-libre-5.8-pristine-source): Update hash.
2020-08-21gnu: linux-libre@5.7: Update to 5.7.17.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.17. (linux-libre-5.7-pristine-source): Update hash.
2020-08-21gnu: linux-libre@5.4: Update to 5.4.60.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.60. (linux-libre-5.4-pristine-source): Update hash.
2020-08-21gnu: linux-libre@4.19: Update to 4.19.141.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.141. (linux-libre-4.19-pristine-source): Update hash.
2020-08-21gnu: linux-libre@4.14: Update to 4.14.194.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.194. (linux-libre-4.14-pristine-source): Update hash.
2020-08-21gnu: linux-libre: Update to 5.8.2.Leo Famulari
* gnu/packages/aux-files/linux-libre/5.8-arm.conf, gnu/packages/aux-files/linux-libre/5.8-arm64.conf, gnu/packages/aux-files/linux-libre/5.8-i686.conf, gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: New files. * Makefile.am (AUX_FILES): Add them. * gnu/packages/linux.scm (linux-libre-5.8): New variable. (linux-libre-version, linux-libre-pristine-source, linux-libre-source, linux-libre): Point to linux-libre-5.8*.
2020-08-21gnu: Use a descriptive file-name for linux-libre deblobbing scripts.Leo Famulari
Fixes <https://bugs.gnu.org/42789>. * gnu/packages/linux.scm (linux-libre-deblob-scripts): Set the file-name of the deblob and deblob-check scripts.
2020-08-21gnu: Add ronn-ngPrafulla Giri
* gnu/packages/groff.scm (ronn-ng): New public variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-08-21gnu: dovecot: Support zstd compression.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dovecot)[inputs]: Add zstd:lib.
2020-08-21gnu: vim: Update to 8.2.1500.Jakub Kądziołka
* gnu/packages/vim.scm (vim): Update to 8.2.1500.
2020-08-21gnu: vim: Install man pages.Jakub Kądziołka
2020-08-21gnu: enchant: Depend on hunspell.Julien Lepiller
* gnu/packages/enchant.scm (enchant): Add hunspell as an input.
2020-08-21gnu: hunspell-dict-en: Install all affix files.Julien Lepiller
* gnu/packages/aspell.scm (aspell-word-list): Install affix files corresponding to installed dictionary files.
2020-08-20gnu: libmhash: Fix use-after-free in tests.Eric Bavier
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
2020-08-20gnu: r-fourcseq: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fourcseq): Update to 1.22.1.
2020-08-20gnu: r-complexheatmap: Update to 2.4.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
2020-08-20gnu: r-gage: Update to 2.38.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3. [propagated-inputs]: Add r-go-db.
2020-08-20gnu: r-annotationhub: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
2020-08-20gnu: r-delayedarray: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
2020-08-20gnu: r-annotationdbi: Update to 1.50.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
2020-08-20gnu: r-biocviews: Update to 1.56.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
2020-08-20gnu: r-biocset: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
2020-08-20gnu: r-experimenthub: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
2020-08-20gnu: r-variancepartition: Update to 1.18.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
2020-08-20gnu: r-rsubread: Update to 2.2.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
2020-08-20gnu: r-rbowtie: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
2020-08-20gnu: r-biocfilecache: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
2020-08-20gnu: r-rbowtie2: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
2020-08-20gnu: r-motifstack: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
2020-08-20gnu: r-clusterprofiler: Update to 3.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1. [propagated-inputs]: Add r-rlang.
2020-08-20gnu: r-gosemsim: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.