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2022-12-19gnu: r-ggtern: Update to 3.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.1.
2022-12-19gnu: r-htmltools: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.4. [propagated-inputs]: Add r-ellipsis.
2022-12-19gnu: r-jsonlite: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.4.
2022-12-19gnu: r-httpuv: Update to 1.6.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.7.
2022-12-19gnu: r-ggside: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggside): Update to 0.2.2. [propagated-inputs]: Add r-vctrs.
2022-12-19gnu: r-ggpmisc: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.2.
2022-12-19gnu: r-ggpp: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.0.
2022-12-19gnu: r-datawizard: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.6.5.
2022-12-19gnu: r-htmlwidgets: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.0. [propagated-inputs]: Add r-knitr and r-rmarkdown.
2022-12-19gnu: r-bslib: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-bslib): Update to 0.4.2. [source]: Update snippet. [propagated-inputs]: Add r-base64enc and r-mime. [native-inputs]: Update bootstrap5 from 5.1.3 to 5.2.2.
2022-12-19gnu: r-stringr: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringr): Update to 1.5.0. [propagated-inputs]: Add r-cli, r-lifecycle, r-rlang, and r-vctrs.
2022-12-19gnu: r-lifecycle: Remove r-knitr from native inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-lifecycle)[native-inputs]: Remove r-knitr.
2022-12-19gnu: r-vctrs: Remove r-knitr from native inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-vctrs)[native-inputs]: Remove.
2022-12-19gnu: musescore: Fix build.Liliana Marie Prikler
* gnu/packages/music.scm (musescore)[snippet]: Remove crashpad_handler and associated install actions. [arguments]<#:configure-flags>: Add “-DBUILD_DIAGNOSTICS=OFF”. [inputs]: Add qtquickcontrols-5. Co-authored-by: Vivien Kraus <vivien@planete-kraus.eu> Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-19gnu: giac: Update to 1.9.0-33.Nicolas Goaziou
* gnu/packages/algebra.scm (giac): Update to 1.9.0-33.
2022-12-19gnu: emacs-package-build: Update to 4.0.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-package-build): Update to 4.0.0.
2022-12-19gnu: emacs-jsonrpc: Update to 1.0.16.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-jsonrpc): Update to 1.0.16. [source]<origin>: Remove ".git" suffix from URL.
2022-12-19gnu: emacs-vertico-posframe: Update to 0.5.9.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-vertico-posframe): Update to 0.5.9.
2022-12-19gnu: emacs-subed: Update to 1.0.27.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.27.
2022-12-19gnu: emacs-engine-mode: Update to 2.2.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-engine-mode): Update to 2.2.1.
2022-12-19gnu: emacs-eglot: Update to 1.10.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eglot): Update to 1.10. [source]: Use GNU ELPA as upstream since the project as been merged into Emacs and the GitHub repository is no longer up-to-date. [arguments]: Remove tests, which do not exist in the tarball. [propagated-inputs]: Add EMACS-EXTERNAL-COMPLETION, EMACS-SEQ, EMACS-XREF.
2022-12-19gnu: Add emacs-external-completion.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-external-completion): New variable.
2022-12-19gnu: emacs-clojure-mode: Update to 5.16.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.16.0.
2022-12-19gnu: Add cl-germinal.Paul A. Patience
* gnu/packages/lisp-xyz.scm (sbcl-germinal, cl-germinal, ecl-germinal): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: cl-tripod: Update to 0.0.1-1.b019a27.Paul A. Patience
* gnu/packages/lisp-xyz.scm (sbcl-tripod): Update to 0.0.1-1.b019a27. [outputs, arguments]: New fields. [inputs]: Add sbcl-local-time, sbcl-nactivitypub and sbcl-njson, and reindent. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: Add cl-coleslaw.Paul A. Patience
* gnu/packages/lisp-xyz.scm (sbcl-coleslaw, cl-coleslaw, ecl-coleslaw): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: tinmop: Update to 0.9.9.14.cage
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.9.14. [inputs]: Add imagemagick. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: cl-i18n: Update to 0.5.3-2.5b569f3.cage
* gnu/packages/lisp-xyz.scm (sbcl-cl-i18n): Update to 0.5.3-2.5b569f3. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: sbcl-triads: Add bin output.Charles Jackson
* gnu/packages/lisp-xyz.scm (sbcl-triads)[arguments]: Add 'build-binary' phase to build and install the binary executable. (ecl-triads): Remove the build-binary phase because this program has not been tested on ECL upstream. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19gnu: cl-croatoan: Update to 0.0.1-6.35c92fc.cage
* gnu/packages/lisp-xyz.scm (sbcl-croatoan): Update to 0.0.1-6.35c92fc. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-19home: xdg: Make it possible to extend user-directories service.Andrew Tropin
* gnu/home/services/xdg.scm (home-xdg-user-directories-service-type): Make it possible to override user-directories configuration by extending.
2022-12-19gnu: tor: Update to 0.4.7.12.Efraim Flashner
* gnu/packages/tor.scm (tor): Update to 0.4.7.12.
2022-12-19gnu: Add nilfs-utils.Efraim Flashner
* gnu/packages/file-systems.scm (nilfs-utils): New variable.
2022-12-19gnu: Add guile-aws.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-aws): New variable.
2022-12-18gnu: kdebugsettings: Fix typo.Vagrant Cascadian
* gnu/packages/kde-utils.scm (kdebugsettings)[description]: Remove use of "allows to".
2022-12-18gnu: r-gson: Fix typo.Vagrant Cascadian
* gnu/packages/cran.scm (r-gson)[description]: Fix pluralized "This package".
2022-12-19Merge branch 'version-1.4.0'Ludovic Courtès
2022-12-18gnu: Add guile-pubstrate.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-pubstrate): New variable.
2022-12-18gnu: Add guile-8sync-for-pubstrate.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-8sync-for-pubstrate): New variable.
2022-12-18gnu: guile-webutils: Update to 0.1-1.d309d65.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-webutils): Update to 0.1-1.d309d65. [source]: Remove snippet.
2022-12-18gnu: vim: Update to 9.0.1073.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 9.0.1073.
2022-12-18gnu: toot: Update to 0.32.1.Efraim Flashner
* gnu/packages/mastodon.scm (toot): Update to 0.32.1.
2022-12-18gnu: khard: Update to 0.18.0.Efraim Flashner
* gnu/packages/mail.scm (khard): Update to 0.18.0.
2022-12-18gnu: git-annex: Update to 10.20221212.Efraim Flashner
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20221212.
2022-12-18gnu: guix: Update to 1.4.0.Ludovic Courtès
2022-12-18gnu: python-scanpy: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'build and 'install phases; move pytest arguments to #:test-flags; add 'pretend-version phase; replace custom 'check phase with 'delete-bad-tests phase.
2022-12-18gnu: python-multivelo: Simplify with pyproject-build-system.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-multivelo)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'build and 'install phases.
2022-12-18services: kmsconf: Load GNU Freefont.Ludovic Courtès
This provides glyphs for additional fonts such as Amharic that were otherwise missing. Fixes <https://issues.guix.gnu.org/60164>. Reported by Wolf <wolf@wolfsden.cz>. * gnu/services/base.scm (kmscon-service-type): In 'start' method, pass #:environment-variables to set 'XDG_DATA_DIRS'.
2022-12-18installer: final: Delete SQLite WAL and shm files upon completion.Ludovic Courtès
Previously, db.sqlite-{wal,shm} could be left behind after stopping guix-daemon. When resuming installation, SQLite could end up behaving as if transactions visible in the WAL file had been committed, in spite of having restored SAVED-DATABASE. Fixes <https://issues.guix.gnu.org/59784>. Reported by pelzflorian (Florian Pelz) <pelzflorian@pelzflorian.de>. * gnu/installer/final.scm (install-system): Before restarting guix-daemon, delete db.sqlite-{wal,shm}.
2022-12-18installer: final: Stop guix-daemon before accessing store database.Ludovic Courtès
As part of fixing <https://issues.guix.gnu.org/59784>, make sure /var/guix/db.sqlite is only copied while guix-daemon is stopped. * gnu/installer/final.scm (call-with-mnt-container): Add FIXME comment. (install-system): Copy DATABASE-FILE and SAVED-DATABASE only when 'guix-daemon' is stopped. Add logging lines.