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2023-07-16gnu: r-with-tests: Update to 4.3.1. r-updatesRicardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
2023-07-16gnu: r-with-tests: Fix reference to grep.Ricardo Wurmus
detectCores.R fails to return the number of cores when running R in a container without grep. Reported-by: Jonas Freimuth. * gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to grep and wc in detectCores.R. [inputs]: Add grep.
2023-07-15gnu: Add linux-libre 6.4Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.4-version, linux-libre-6.4-gnu-revision, deblob-scripts-6.4, linux-libre-6.4-pristine-source, linux-libre-6.4-source, linux-libre-headers-6.4, linux-libre-6.4: New variables. * gnu/packages/aux-files/linux-libre/6.4-arm.conf, * gnu/packages/aux-files/linux-libre/6.4-arm64.conf, * gnu/packages/aux-files/linux-libre/6.4-i686.conf, * gnu/packages/aux-files/linux-libre/6.4-x86_64.conf: New files. * Makefile.am (AUX_FILES): Add them.
2023-07-15gnu: python-distributed: Update to 2023.7.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
2023-07-15gnu: python-dask: Update to 2023.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask): Update to 2023.7.0.
2023-07-15gnu: r-pando: Relax requirements.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-pando)[arguments]: Patch DESCRIPTION file.
2023-07-15gnu: cl-nhooks: Update to 1.2.1.Artyom Bologov
* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.2.1. [native-inputs]: Remove sbcl-fiveam, add sbcl-lisp-unit2. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-15gnu: node-lts: Install files irrespective of number of hardlinks.Ricardo Wurmus
* gnu/packages/node.scm (node-lts)[arguments]: Add build phase 'ignore-number-of-hardlinks.
2023-07-15gnu: node-lts: Simplify snippet.Ricardo Wurmus
* gnu/packages/node.scm (node-lts)[source]: Remove quasiquote, trailing #T, and IF with explicit booleans.
2023-07-09gnu: cabal-install, ghc-cabal-syntax: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/haskell-apps.scm (cabal-install)[home-page]: Use HTTPS. * gnu/packages/haskell-xyz.scm (ghc-cabal-syntax)[home-page]: Likewise.
2023-07-09gnu: bwa-pssm: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (bwa-pssm)[home-page]: Update.
2023-07-09gnu: brdf-explorer: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/graphics.scm (brdf-explorer)[synopsis, description]: Use @acronym{}.
2023-07-09gnu: brdf-explorer: Use Web Archived home page.Tobias Geerinckx-Rice
* gnu/packages/graphics.scm (brdf-explorer)[home-page]: Refer to Web Archive.
2023-07-09gnu: blasr-libcpp, blasr: Use Web Archived home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (blasr-libcpp, blasr)[home-page]: Refer to Web Archive.
2023-07-09gnu: yadifa: Update to 2.6.4.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (yadifa): Update to 2.6.4. [arguments]: Add a new 'unhard-code phase.
2023-07-09gnu: knot: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot)[arguments]: Rewrite as G-expressions.
2023-07-09gnu: knot: Update to 3.2.8.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot): Update to 3.2.8.
2023-07-09gnu: nsd: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (nsd)[arguments]: Rewrite as G-expressions.
2023-07-09gnu: nsd: Update to 4.7.0.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (nsd): Update to 4.7.0.
2023-07-09gnu: btor2tools: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (btor2tools)[home-page]: Use HTTPS.
2023-07-09gnu: boolector: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (boolector)[home-page]: Use HTTPS.
2023-07-14gnu: python-yubikey-manager: Update to 5.1.1.John Kehayias
* gnu/packages/security-tokens.scm (python-yubikey-manager): Update to 5.1.1. [source]: Update url. [build-system]: Switch to pyproject-build-system. [arguments]: Delete. [propagated-inputs]: Remove python-six. Add python-keyring. Reorder alphabetically. [native-inputs]: Remove python-mock. Add python-makefun, python-poetry-code and python-pytest. Reorder alphabetically. Co-authored-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14gnu: Add python-makefun.John Kehayias
* gnu/packages/python-xyz.scm (python-makefun): New variable. Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14gnu: python-fido2: Update to 1.1.1.John Kehayias
* gnu/packages/security-tokens.scm (python-fido2): Update to 1.1.1. [build-system]: Switch to pyproject-build-system. [arguments]: Enable tests. Use gexps in phases. [propagated-inputs]: Remove python-six. Add python-pyscard. [native-inputs]: Remove python-mock and python-pyfakefs. Add python-poetry-core and python-pytest. Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14gnu: python-pyscard: Update to 2.0.7.John Kehayias
* gnu/packages/security-token.scm (python-pyscard): Update to 2.0.7. [arguments]{phases}: Use search-input-directory. Remove trailing #t. Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14gnu: godot: Update to 4.1. Rename godot@3 to godot-lts.John Kehayias
* gnu/packages/game-development.scm (godot): Update to 4.1. [source]: Update snippet: remove embree and enet; add amd-fsr, astcenc, basis_universal, brotli, linuxbsd_headers, etcpak, meshoptimizer, msdfgen, noise, openxr, rvo2, spirv-reflect, thorvg, volk, vulkan. [arguments]: Remove #:scons. Update #:scons-flags to unbundle more libraries. [phases]: Remove 'build-headless phase (headless is no longer has a separate build). Add 'fix-dl-open-paths and 'unbundle-xkbcommon phases. In 'install phase, remove headless output. Update 'wrap phase to remove eudev. [outputs]: Remove headless. [inputs]: Add dbus, embree, enet, fontconfig, glslang, libpng, harfbuzz, icu4c, libxkbcommon, openxr, speech-dispatcher, vulkan-loader, zlib. Remove bullet. Rename freetype to freetype-with-brotli. (godot-lts): New variable. godot@3 is the LTS release. * gnu/packages/games.scm (superstarfighter)[native-inputs]: Use it. [inputs]: Use it.
2023-07-14gnu: Add freetype-with-brotli.John Kehayias
* gnu/packages/fontutils.scm (freetype-with-brotli): New variable.
2023-07-14gnu: racket: Update to 8.9.Philip McGrath
* gnu/packages/chez.scm (chez-scheme-for-racket): Update to 9.9.9-pre-release.16. * gnu/packages/racket.scm (%racket-version): Update to 8.9. (racket)[inputs]<deinprogramm, draw, drracket, future-visualizer, gui> <htdp, macro-debugger, math, pict, plot, rackunit, redex, scribble> <slideshow, snip, typed-racket, srfi, swindle, syntax-color> <web-server>: Update checksums. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-09gnu: avfs: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (avfs)[home-page]: Use HTTPS.
2023-07-09gnu: 4ti2: Update home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (4ti2)[home-page]: Update.
2023-07-09gnu: aumix: Use Web Archive URLs.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (aumix)[source, home-page]: Use copies archived by the Wayback Machine.
2023-07-09gnu: armadillo: Update to 12.4.1.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (armadillo): Update to 12.4.1.
2023-07-09gnu: aspell-dict-nb: Correct to 0.50-2.Tobias Geerinckx-Rice
* gnu/packages/aspell.scm (aspell-dict-nb): Fix version number. No hash change.
2023-07-09gnu: Use aquamaniac.de/ as home page for its projects.Tobias Geerinckx-Rice
* gnu/packages/gnucash.scm (gwenhywfar, aqbanking)[home-page]: Use top-level directory as done upstream.
2023-07-09gnu: ghostscript: Fix CVE-2023-36664.Tobias Geerinckx-Rice
* gnu/packages/ghostscript.scm (ghostscript/fixed): New variable. (ghostscript)[replacement]: Assign it to new field. * gnu/packages/patches/ghostscript-CVE-2023-36664.patch, gnu/packages/patches/ghostscript-CVE-2023-36664-fixup.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2023-07-09gnu: antiword: Use Web Archive URLs.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (antiword)[source, home-page]: Use copies archived by the Wayback Machine.
2023-07-09gnu: anthy: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/anthy.scm (anthy)[description]: Use @file{}.
2023-07-09gnu: anthy: Add source mirror URL.Tobias Geerinckx-Rice
* gnu/packages/anthy.scm (anthy)[source]: Add a Japanese Gentoo distfiles mirror.
2023-07-09gnu: altermime: Cross-compile.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (altermime)[arguments]: Use CC-FOR-TARGET. Add a new 'do-not-strip phase.
2023-07-09gnu: altermime: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (altermime)[arguments]: Rewrite as G-expressions. Don't explicitly return #t from phases.
2023-07-09gnu: altermime: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (altermime)[source]: Use HTTPS.
2023-07-09gnu: alpine: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (alpine)[source]: Use HTTPS.
2023-07-09gnu: aiger: Use HTTPS source & home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (aiger)[source, home-page]: Use HTTPS.
2023-07-09gnu: borg: Update to 1.2.4.Tobias Geerinckx-Rice
* gnu/packages/backup.scm (borg): Update to 1.2.4.
2023-07-14gnu: rumpkernel: Don't error for non x86 systems.Christopher Baines
As the lack of handling other systems, say aarch64-linux here seemed to cause problems with guix pull on these systems. This should work around #64609. * gnu/packages/hurd.scm (rumpkernel)[arguments]: Don't error for any system.
2023-07-14Revert "gnu: mig: Update to 1.8+git20230520."Christopher Baines
As noted in the comment, I think using git-fetch caused problems computing derivaations for i586-linux (Guix would just use more and more memory). This reverts commit 999a6ac0cfd9339e138007ed9e4e544a55e92e3e.
2023-07-14gnu: zig-0.9: Fix building on riscv64-linux.Efraim Flashner
* gnu/packages/zig.scm (zig-0.9)[source]: Add patch. [arguments]: Skip tests when building for riscv64-linux. When building for riscv64-linux add a phase to adjust the tests. * gnu/packages/patches/zig-0.9-riscv-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2023-07-13gnu: linux-libre: Update to 6.3.13.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.13. (linux-libre-6.3-pristine-source): Update hash.
2023-07-13gnu: Add python-plotnine.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-07-13gnu: python-mizani: Fix embedded version string.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add python-setuptools-scm to correct embedded version form 0.0.0 to 0.9.2.
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