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2020-08-21gnu: hunspell-dict-en: Install all affix files.Julien Lepiller
* gnu/packages/aspell.scm (aspell-word-list): Install affix files corresponding to installed dictionary files.
2020-08-20gnu: libmhash: Fix use-after-free in tests.Eric Bavier
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
2020-08-20gnu: r-fourcseq: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fourcseq): Update to 1.22.1.
2020-08-20gnu: r-complexheatmap: Update to 2.4.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
2020-08-20gnu: r-gage: Update to 2.38.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3. [propagated-inputs]: Add r-go-db.
2020-08-20gnu: r-annotationhub: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
2020-08-20gnu: r-delayedarray: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
2020-08-20gnu: r-annotationdbi: Update to 1.50.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
2020-08-20gnu: r-biocviews: Update to 1.56.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
2020-08-20gnu: r-biocset: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
2020-08-20gnu: r-experimenthub: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
2020-08-20gnu: r-variancepartition: Update to 1.18.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
2020-08-20gnu: r-rsubread: Update to 2.2.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
2020-08-20gnu: r-rbowtie: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
2020-08-20gnu: r-biocfilecache: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
2020-08-20gnu: r-rbowtie2: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
2020-08-20gnu: r-motifstack: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
2020-08-20gnu: r-clusterprofiler: Update to 3.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1. [propagated-inputs]: Add r-rlang.
2020-08-20gnu: r-gosemsim: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
2020-08-20gnu: r-oligo: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
2020-08-20gnu: r-oligoclasses: Update to 1.50.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
2020-08-20gnu: bind: Update to 9.16.6 [multiple CVE fixes].Tobias Geerinckx-Rice
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and CVE-2020-8624. * gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
2020-08-20gnu: perl-catalyst-plugin-configloader: Update to 0.35.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
2020-08-20gnu: perl-catalyst-devel: Update to 1.41.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
2020-08-20gnu: ne: Update to 3.3.0.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
2020-08-20gnu: p11-kit: Update to 0.23.21.Tobias Geerinckx-Rice
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
2020-08-20gnu: r-pbapply: Update to 1.4-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
2020-08-20gnu: r-chron: Update to 2.3-56.Ricardo Wurmus
* gnu/packages/statistics.scm (r-chron): Update to 2.3-56.
2020-08-20gnu: r-dplyr: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.2.
2020-08-20gnu: r-mgcv: Update to 1.8-32.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-32.
2020-08-20gnu: r-mass: Update to 7.3-52.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-52.
2020-08-20gnu: r-stanheaders: Update to 2.21.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-6.
2020-08-20gnu: r-showtext: Update to 0.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtext): Update to 0.9.
2020-08-20gnu: r-haplo-stats: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.2. [propagated-inputs]: Add r-arsenal.
2020-08-20gnu: r-emmeans: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.0.
2020-08-20gnu: r-abjutils: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-abjutils): Update to 0.3.1. [propagated-inputs]: Remove r-devtools, r-furrr, r-future, r-glue, r-httr, r-progress, r-readr, r-scales, and r-tibble.
2020-08-20gnu: r-hdf5r: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.3.
2020-08-20gnu: r-hardyweinberg: Update to 1.6.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.6.
2020-08-20gnu: r-jomo: Update to 2.7-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): Update to 2.7-2.
2020-08-20gnu: r-ape: Update to 5.4-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ape): Update to 5.4-1.
2020-08-20gnu: Add r-arsenal.Ricardo Wurmus
* gnu/packages/cran.scm (r-arsenal): New variable.
2020-08-20gnu: python-fpylll: Update to 0.5.2.Andreas Enge
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.2.
2020-08-20gnu: fplll: Update to 5.3.2.Andreas Enge
* gnu/packages/algebra.scm (fplll): Update to 5.3.2.
2020-08-20gnu: python-libtmux: Update to 0.8.3.Tobias Geerinckx-Rice
* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.3.
2020-08-20gnu: vis: Run most tests.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (vis)[arguments]: Add ‘unpack-test-suite’ and ‘set-up-tests’ phase. Run the tests after wrapping vis. [native-inputs]: Add vis-test origin.
2020-08-20gnu: vis: Fetch sources from git.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (vis)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2020-08-20gnu: vis: Update to 0.6.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (vis): Update to 0.6.
2020-08-20gnu: emacs-browse-at-remote: Update to 0.14.0.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-browse-at-remote): Update to 0.14.0. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-08-20gnu: emacs-perspective: Update to 2.10.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.10. (arguments): Run tests suite. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-08-20gnu: emacs-ob-restclient: Update to 0.02-2.f7449b2.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-ob-restclient): Update to 0.02-2.f7449b2. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
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