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2017-07-01gnu: cd-hit: Update to 4.6.8.Ben Woodcroft
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.8.
2017-07-01gnu: bwa: Update to 0.7.15.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.15.
2017-07-01gnu: btrfs-progs: Update to 4.11.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.1.
2017-07-01gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377].Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.3.0.9.
2017-06-30gnu: Add emacs-exwm-x.Feng Shu
* gnu/packages/emacs.scm (emacs-exwm-x): New variable.
2017-06-30gnu: Add emacs-switch-window.Feng Shu
* gnu/packages/emacs.scm (emacs-switch-window): New variable.
2017-06-30gnu: guile-cairo: Switch to Guile 2.2.Ludovic Courtès
This patch adjusts dependent packages accordingly. * gnu/packages/gtk.scm (guile-cairo)[inputs]: Switch to GUILE-2.2 and GUILE-LIB. (guile-rsvg)[inputs]: Likewise. (guile-present)[inputs]: Likewise. (guile-gnome)[inputs]: Likewise. * gnu/packages/plotutils.scm (guile-charting)[inputs]: Switch go GUILE-2.2.
2017-06-30gnu: guile-gnome: Update to 2.16.5.Ludovic Courtès
* gnu/packages/gtk.scm (guile-gnome): Update to 2.16.5. [arguments] <pre-configure>: Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0". [properties]: New field.
2017-06-30gnu: guile-rsvg: Update to commit 05c6a2fd.Ludovic Courtès
* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd. [source](url): Change to gitlab.com. (snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0". * gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use "$GUILE_EFFECTIVE_VERSION" instead of "2.0".
2017-06-30gnu: guile-lib: Switch to Guile 2.2.Ludovic Courtès
* gnu/packages/guile.scm (guile-lib)[inputs]: Replace GUILE-2.0 with GUILE-2.2. (guile2.0-lib): New variable. (guile2.2-lib): Mark as deprecated. * gnu/packages/guile.scm (guile-ics): Use GUILE2.0-LIB. * gnu/packages/gtk.scm (guile-cairo, guile-rsvg) (guile-present, guile-gnome): Likewise. * gnu/packages/skribilo.scm (skribilo): Likewise.
2017-06-30gnu: guile-lib: Update to 0.2.5.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.1.
2017-06-30gnu: npth: Update to 1.5.Leo Famulari
* gnu/packages/gnupg.scm (npth): Update to 1.5.
2017-06-30gnu: libreoffice: Update to 5.3.2.2.Leo Famulari
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.2.2.
2017-06-30gnu: hwloc: Add "lib" and "debug" outputs.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc)[outputs]: New field. [arguments]: Add 'avoid-circular-references' phase. (openmpi)[inputs]: Use the "lib" output of HWLOC. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2017-06-30gnu: hwloc: Use /var as the localstatedir.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
2017-06-30gnu: Add mkvtoolnix.Gregor Giesen
* gnu/packages/video.scm (mkvtoolnix): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-06-30gnu: Add libmatroska.Gregor Giesen
* gnu/packages/video.scm (libmatroska): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-06-30gnu: Add libebml.Gregor Giesen
* gnu/packages/xml.scm (libebml): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-06-30gnu: Add nlohmann-json-cpp.Gregor Giesen
* gnu/packages/serialization.scm (nlohmann-json-cpp): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-06-30gnu: isc-dhcp: Update bundled bind to 9.9.10-P2 [fixes CVE-2017-{3142,3143}].Leo Famulari
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P2.
2017-06-30gnu: bind: Update to 9.11.1-P2 [fixes CVE-2017-{3142,3143}].Leo Famulari
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P2.
2017-06-30gnu: Add jo.Arun Isaac
* gnu/packages/web.scm (jo): New variable.
2017-06-30gnu: Add emacs-org-edit-latex.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-org-edit-latex): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-06-30gnu: itpp: Use texlive-tiny and ghostscript.Ricardo Wurmus
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with texlive-tiny; add ghostscript.
2017-06-30gnu: gnuplot: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal with texlive-tiny.
2017-06-30gnu: giac-xcas: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Replace texlive-minimal with texlive-tiny.
2017-06-30gnu: pari-gp: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-minimal with texlive-tiny.
2017-06-30gnu: po4a: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/gettext.scm (po4a)[native-inputs]: Replace texlive-minimal with texlive-tiny.
2017-06-30system: Use "@" to refer to the 'shadow' package.Ludovic Courtès
Reported by Mark H Weaver at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00349.html>. * gnu/system.scm (%base-packages): Use '@' for shadow. This fixes an error on Guile 2.0 where 'shadow' alone resolves to the (gnu system shadow) module.
2017-06-30gnu: linux-libre: Update to 4.11.8.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.8. (%linux-libre-hash): Update hash.
2017-06-30gnu: linux-libre@4.9: Update to 4.9.35.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.35.
2017-06-30gnu: linux-libre@4.4: Update to 4.4.75.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.75.
2017-06-30gnu: linux-libre@4.1: Update to 4.1.42 [mitigates CVE-2017-1000364].Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.42.
2017-06-30vm: Use 'fold2' from (guix combinators).Ludovic Courtès
* gnu/build/vm.scm: Use (guix combinators). (fold2): Remove.
2017-06-30vm: Estimate the disk size by default.Ludovic Courtès
* gnu/build/vm.scm (estimated-partition-size): New procedure. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Change #:disk-image-size default to 'guess. [builder]: When DISK-IMAGE-SIZE is 'guess, use 'estimated-partition-size' and compute and estimate of the image size. (qemu-image): Likewise. * guix/build/store-copy.scm (file-size, closure-size): New procedures. * guix/scripts/system.scm (%default-options): Change 'image-size' to 'guess. * doc/guix.texi (Building the Installation Image): Remove '--image-size' flag from example. (Invoking guix system): Document the image size estimate.
2017-06-30vm: Display the disk and partition sizes.Ludovic Courtès
* gnu/build/vm.scm (load-in-linux-vm): Add 'format' call when MAKE-DISK-IMAGE? is true. (initialize-partition-table): Show the size of the partitions being created.
2017-06-30vm: Fix 'load-in-linux-vm' docstring.Ludovic Courtès
* gnu/build/vm.scm (load-in-linux-vm): Change default value of #:disk-image-size. Update docstring to note that DISK-IMAGE-SIZE is in bytes.
2017-06-29gnu: poppler: Fix CVE-2017-{9775,9776}.Leo Famulari
* gnu/packages/pdf.scm (poppler)[replacement]: New field. (poppler-0.56.0): New variable. (poppler-qt4, poppler-qt5): Use 'package/inherit'.
2017-06-29gnu: thermald: Add file-name for source.Efraim Flashner
* gnu/packages/admin.scm (thermald)[source]: Add file-name field.
2017-06-29gnu: thermald: Only build on i686 and x86_64.Efraim Flashner
* gnu/packages/admin.scm (thermald)[supported-systems]: New field.
2017-06-29gnu: libgcrypt: Add mitigation for CVE-2017-7526.Efraim Flashner
* gnu/packages/gnupg.scm (libgcrypt)[replacment]: New field. (libgcrypt-1.7.8): New variable. (libgcrypt-1.5)[replacment]: New field.
2017-06-29gnu: mes: Update to 0.8.Jan Nieuwenhuizen
* gnu/packages/mes.scm (mes): Update to 0.8.
2017-06-29gnu: Add mescc-tools.Jan Nieuwenhuizen
* gnu/packages/mes.scm (mescc-tools): New variable.
2017-06-29system: Add 'shadow' to %BASE-PACKAGES.Ludovic Courtès
Suggested by Göktuğ Kayaalp <self@gkayaalp.com>. * gnu/system.scm (%base-packages): Add SHADOW.
2017-06-29gnu: libxfce4ui: Do not propagate gtk+-2.Ricardo Wurmus
Propagation of both gtk+ and gtk+-2 causes a conflict to be detected, preventing the installation of xfce. * gnu/packages/xfce.scm (libxfce4ui)[propagated-inputs]: Move "gtk+-2"... [inputs]: ...to here. (garcon)[inputs]: Add "gtk+-2". (xfce4-appfinder)[inputs]: Add "gtk+-2". (xfce4-power-manager)[inputs]: Add "gtk+-2". (ristretto)[inputs]: Add "gtk+-2".
2017-06-29gnu: xfce: Build union instead of propagating inputs.Ricardo Wurmus
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: Move all... [inputs]: ...here. [arguments]: Build a union.
2017-06-29gnu: clojure: Update "tools-reader-src" to 1.0.0.Alex Vong
* gnu/packages/java.scm (clojure)[inputs]: Update "tools-reader-src" to 1.0.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-29gnu: Add procenv.Dave Love
* gnu/packages/linux.scm (procenv): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-29gnu: ansible: Apply experimental patch to deal with wrapping of ansible script.Jelle Licht
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the rationale. * gnu/packages/patches/ansible-wrap-program-hack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (ansible)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-29gnu: node: Update to 8.1.2.Jelle Licht
* gnu/packages/node.scm (node): Update to 8.1.2. (node)[arguments]: Disabled more tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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