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2019-10-07gnu: icedtea-7: Avoid massive rebuild.Ludovic Courtès
Reported by Efraim Flashner. * gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path' definition in 'install-libjvm' to avoid the rebuilds that commit 1b6f99ea538d767099596860017e67755c1ac42f would otherwise entail.
2019-10-07gnu: aria2: Update to 1.35.0.Efraim Flashner
* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0. [source]: Use new upstream uri. Remove patch. * gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-10-07gnu: icedtea-7: Support non-Intel systems.Ludovic Courtès
This is a followup to 1b6f99ea538d767099596860017e67755c1ac42f. * gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm' phase, match armhf and aarch64. [supported-systems]: New field.
2019-10-07gnu: emacs-mbsync: Update to 0.1.2-4.b62491c.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.
2019-10-07gnu: emacs-evil-nerd-commenter: Update to 3.3.8.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.
2019-10-07gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.
2019-10-07gnu: Add emacs-peg.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.
2019-10-07gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.
2019-10-06gnu: r-variancepartition: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1. [propagated-inputs]: Add r-biocparallel.
2019-10-06gnu: r-mixomics: Update to 6.8.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06gnu: r-regioner: Update to 1.16.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-10-06gnu: r-backports: Update to 1.1.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
2019-10-06gnu: r-gargle: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
2019-10-06gnu: r-rcppparallel: Update to 4.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
2019-10-06gnu: r-hdf5r: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
2019-10-06gnu: r-promises: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
2019-10-06gnu: r-later: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
2019-10-06gnu: r-maptools: Update to 0.9-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
2019-10-06gnu: r-htmlwidgets: Update to 1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
2019-10-06gnu: r-htmltools: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0. [arguments]: Remove field. [propagated-inputs]: Add r-rlang.
2019-10-06gnu: r-seurat: Update to 3.1.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1. [propagated-inputs]: Add r-httr.
2019-10-06gnu: r-rsamtools: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
2019-10-06gnu: r-biomart: Update to 2.40.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
2019-10-06gnu: emacs-helm-ag: Fix version.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
2019-10-06gnu: Add emacs-helm-org.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
2019-10-06gnu: emacs-helm: Update to 3.5.0.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
2019-10-06gnu: nss-pam-ldapd: Update to 0.9.11.Ricardo Wurmus
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11. [inputs]: Replace python-2 with python.
2019-10-06gnu: Add mloop.Ricardo Wurmus
* gnu/packages/music.scm (mloop): New variable.
2019-10-06gnu: guile-studio: Update to 0-2.4d63f3d.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.
2019-10-06gnu: icedtea-7: Fix build on i686-linux.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when the system is "i686-linux".
2019-10-06gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.Ricardo Wurmus
* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags: --disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi. [inputs]: Add libffi.
2019-10-06gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.
2019-10-06gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.
2019-10-06gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.
2019-10-06gnu: Add cl-goject-introspection.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-goject-introspection, sbcl-cl-gobject-introspection): New variables.
2019-10-06services: shepherd: Compile service files.Ludovic Courtès
This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right after boot on a bare-bones system (x86_64-linux). * gnu/services/shepherd.scm (scm->go): New procedure. (shepherd-configuration-file)[config]: Call it and use 'load-compiled' instead of 'primitive-load'.
2019-10-06services: udev: Explicitly depend on (gnu build linux-boot).Ludovic Courtès
* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in 'with-imported-modules'.
2019-10-06services: agetty: Explicitly depend on (gnu build linux-boot).Ludovic Courtès
* gnu/services/base.scm (default-serial-port): Wrap in 'with-imported-modules'.
2019-10-06system: Add 'mount' and 'umount' to '%setuid-programs'.Ludovic Courtès
Fixes <https://bugs.gnu.org/37569>. Reported by Diego Nicola Barbato <dnbarbato@posteo.de>. * gnu/system.scm (%setuid-programs): Add "mount" and "umount" from util-linux.
2019-10-06gnu: Add cl-random-forest.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest, ecl-cl-random-forest): New variables.
2019-10-06gnu: Add cl-online-learning.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning, cl-online-learning, ecl-cl-online-learning): New variables.
2019-10-06gnu: Add cl-libsvm-format.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format, ecl-cl-libsvm-format): New variables.
2019-10-06gnu: Add cl-store.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New variables.
2019-10-06gnu: sbcl-hu.dwim.asdf: Update to 20190521.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521. [uri]: Fetch more recent version from Quicklisp.
2019-10-06gnu: sbcl-alexandria: Update to 1.0.0.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0. [native-inputs]: Add rt.
2019-10-06gnu: ecl: Do not compile the deprecated MIT-RT.Guillaume Le Vaillant
Compiling the rt bundled with ECL prevents the ecl-rt package from compiling properly, as ECL thinks it has already been compiled. * gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to 'configure-flags'.
2019-10-06gnu: Add chanl.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables.
2019-10-06gnu: Remove rust-clippy.Efraim Flashner
This was added by accident in 14f3a7e37314451b9b93d7b7536f3ae3dec1ed68. * gnu/packages/crates-io.scm (rust-clippy): Remove variable.
2019-10-06gnu: endless-sky: Update to 0.9.10.Timotej Lazar
* gnu/packages/games.scm (endless-sky): Update to 0.9.10. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06gnu: zabbix: Update to 4.2.7.Giovanni Biscuolo
* gnu/packages/monitoring.scm: (zabbix) Update to 4.2.7. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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