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2015-04-23gnu: gcc: Add a RUNPATH to libstdc++.so so that it finds libgcc_s.so.Ludovic Courtès
Fixes <http://bugs.gnu.org/20358>. Reported by 宋文武 <iyzsong@gmail.com>. * gnu/packages/gcc.scm (gcc-4.7)[arguments]: Add 'substitute*' form for "libstdc++-v3/src/Makefile.in".
2015-04-23gnu: commencement: Remove unneeded configure flag for bootstrap gettext.Ludovic Courtès
* gnu/packages/commencement.scm (gettext-boot0): Remove unneeded --disable-threads.
2015-04-22gnu: perl: Fix Module::Pluggable for symlink forests.Eric Bavier
* gnu/packages/patches/perl-module-pluggable-search.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[source]: Add patch.
2015-04-21gnu: tzdata: Update to 2015c.Mark H Weaver
* gnu/packages/base.scm (tzdata): Update to 2015c.
2015-04-21gnu: glibc: Add dependency on Gettext, to install the message catalogs.Ludovic Courtès
This fixes a bug whereby the libc.mo files were not installed, and thus translations of libc's messages were not available. * gnu/packages/commencement.scm (gettext-boot0): New variable. (glibc-final)[native-inputs]: New field. * gnu/packages/base.scm (glibc)[native-inputs]: Add GNU-GETTEXT.
2015-04-21gnu: libltdl: Remove unneeded patch.Ludovic Courtès
* gnu/packages/autotools.scm (libltdl)[source]: Remove 'patches'.
2015-04-21gnu: ld-wrapper: Ignore the .so argument following '-dynamic-linker'.Ludovic Courtès
Reported at <http://bugs.gnu.org/20102>. * gnu/packages/ld-wrapper.in (library-files-linked): Rename 'path+files' to 'path+files+args'. Thread the reverse list of previous arguments. Add case for when the previous argument is "-dynamic-linker".
2015-04-21gnu: ld-wrapper: Add debugging info.Ludovic Courtès
* gnu/packages/ld-wrapper.in (ld-wrapper): Add "libraries linked" debugging statement.
2015-04-21gnu: Rename ld-wrapper2 to ld-wrapper.Ludovic Courtès
* gnu/packages/ld-wrapper2.in: Rename to... * gnu/packages/ld-wrapper.in: ... this. * gnu-system.am (MISC_DISTRO_FILES): Remove ld-wrapper2.in. * gnu/packages/commencement.scm (fixed-ld-wrapper): Remove. (gcc-toolchain): Restore pre-77db91ad inputs.
2015-04-20system: Make /gnu/store a read-only bind mount by default.Ludovic Courtès
* gnu/system/file-systems.scm (%immutable-store): New variable. (%base-file-systems): Add it. * doc/guix.texi (File Systems): Document it.
2015-04-20file-systems: Use a second 'mount' call for read-only bind mounts.Ludovic Courtès
* gnu/build/file-systems.scm (MS_REMOUNT): New constant. (mount-file-system): Add 'flags' local variable. When FLAGS has MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT. * gnu/services/base.scm (file-system-service) <start>: Likewise.
2015-04-20gnu: Remove all #:select from (gnu packages ...) modules.Ludovic Courtès
This works around Guile bug <http://bugs.gnu.org/15540>. Reported by Andreas Enge <andreas@enge.fr>. * gnu/packages/engineering.scm: Don't #:select from (gnu packages ...). * gnu/packages/gcc.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/pulseaudio.scm: Likewise. * gnu/packages/moe.scm: Likewise, and #:select from (guix licenses) instead.
2015-04-20gnu: Add sra-tools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sra-tools): New variable.
2015-04-20gnu: Add NCBI VDB.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
2015-04-20gnu: Add NGS Java bindings.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngs-java): New variable.
2015-04-20gnu: Add NGS SDK.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
2015-04-20gnu: Add Biopython.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New variables.
2015-04-19gnu: Adjust latest perl modules to new 'modify-phases' syntax.Eric Bavier
* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]: Add missing quotes, as needed since commit f8503e2. * gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise. * gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
2015-04-20gnu: Add WebKitGTK+.宋文武
* gnu/packages/webkit.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-04-19gnu: Add JSON-Any.Eric Bavier
* gnu/packages/perl.scm (perl-json-any): New variable.
2015-04-19gnu: nix: Propagate perl inputs.Eric Bavier
* gnu/packages/package-management.scm (nix)[inputs]: Move perl-www-curl, perl-dbi, perl-dbd-sqlite to... [propagated-inputs]: ...this new field
2015-04-19gnu: Add Sys-Hostname-Long.Eric Bavier
* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
2015-04-19gnu: Add Text-Table.Eric Bavier
* gnu/packages/perl.scm (perl-text-table): New variable.
2015-04-19gnu: Add Text-Aligner.Eric Bavier
* gnu/packages/perl.scm (perl-text-aligner): New variable.
2015-04-19gnu: Add Set-Scalar.Eric Bavier
* gnu/packages/perl.scm (perl-set-scalar): New variable.
2015-04-19gnu: Add SQL-SplitStatement.Eric Bavier
* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
2015-04-19gnu: Add SQL-Tokenizer.Eric Bavier
* gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
2015-04-19gnu: Add Perl Readonly.Eric Bavier
* gnu/packages/perl.scm (perl-readonly): New variable.
2015-04-19gnu: Add Perl Net-Amazon-S3.Eric Bavier
* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-net-amazon-s3): New variable.
2015-04-19gnu: Add XML-LibXML.Eric Bavier
* gnu/packages/xml.scm (perl-xml-libxml): New variable.
2015-04-19gnu: Add XML-SAX;Eric Bavier
* gnu/packages/xml.scm (perl-xml-sax): New variable.
2015-04-19gnu: Add XML-SAX-Base.Eric Bavier
* gnu/packages/xml.scm (perl-xml-sax-base): New variable.
2015-04-19gnu: Add XML-NamespaceSupport.Eric Bavier
* gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
2015-04-19gnu: Add Term-ProgressBar-Simple.Eric Bavier
* gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
2015-04-19gnu: Add Term-ProgressBar-Quiet.Eric Bavier
* gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
2015-04-19gnu: Add Test-MockObject.Eric Bavier
* gnu/packages/perl.scm (perl-test-mockobject): New variable.
2015-04-19gnu: Add UNIVERSAL-isa.Eric Bavier
* gnu/packages/perl.scm (perl-universal-isa): New variable.
2015-04-19gnu: Add UNIVERSAL-can.Eric Bavier
* gnu/packages/perl.scm (perl-universal-can): New variable.
2015-04-19gnu: Add Term-ProgressBar.Eric Bavier
* gnu/packages/perl.scm (perl-term-progressbar): New variable.
2015-04-19gnu: Add TermReadKey.Eric Bavier
* gnu/packages/perl.scm (perl-term-readkey): New variable.
2015-04-19gnu: Add Class-MethodMaker.Eric Bavier
* gnu/packages/perl.scm (perl-class-methodmaker): New variable.
2015-04-19gnu: Add IO-Interactive.Eric Bavier
* gnu/packages/perl.scm (perl-io-interactive): New variable.
2015-04-19gnu: Add Term-Encoding.Eric Bavier
* gnu/packages/perl.scm (perl-term-encoding): New variable.
2015-04-19gnu: Add MooseX-Types-DateTime-MoreCoercions.Eric Bavier
* gnu/packages/perl.scm (perl-moosex-types-datetime-morecoercions): New variable.
2015-04-19gnu: Add Time-Duration-Parse.Eric Bavier
* gnu/packages/perl.scm (perl-time-duration-parse): New variable.
2015-04-19gnu: Add Time-Duration.Eric Bavier
* gnu/packages/perl.scm (perl-time-duration): New variable.
2015-04-19gnu: Add Test-Pod-Coverage.Eric Bavier
* gnu/packages/perl.scm (perl-test-pod-coverage): New variable.
2015-04-19gnu: Add Pod-Coverage.Eric Bavier
* gnu/packages/perl.scm (perl-pod-coverage): New variable.
2015-04-19gnu: Add Devel-Symdump.Eric Bavier
* gnu/packages/perl.scm (perl-devel-symdump): New variable.
2015-04-19gnu: Add MooseX-Types-DateTime.Eric Bavier
* gnu/packages/perl.scm (perl-moosex-types-datetime): New variable.
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