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2016-01-17gnu: Add vdpauinfo.Efraim Flashner
* gnu/packages/video.scm (vdpauinfo): New variable.
2016-01-17gnu: Add libvdpau.Efraim Flashner
* gnu/packages/video.scm (libvdpau): New variable.
2016-01-17gnu: Add autojump.Eric Bavier
* gnu/packages/admin.scm (autojump): New variable.
2016-01-17gnu: hevea: Update to 2.28.Eric Bavier
* gnu/packages/ocaml.scm (hevea): Update to 2.28. [arguments]: Add 'patch-/bin/sh phase.
2016-01-17gnu: unison: Add "doc" output.Eric Bavier
* gnu/packages/ocaml.scm (unison)[source]: Use svn-fetch with snippet. [outputs]: New field. [native-inputs]: Add ghostscript, texlive, hevea, and lynx. [arguments]: Add 'install-doc phase.
2016-01-16gnu: samtools-0.1: Adapt to changes in "samtools" variable.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add "LIBCURSES" make flag; delete "configure" phase; disable tests outside of "substitute-keyword-arguments".
2016-01-16linux-modules: Support 'modprobe.blacklist' on the command line.Ludovic Courtès
* gnu/build/linux-modules.scm (file-name->module-name) (module-black-list): New procedure. * gnu/build/linux-modules.scm (load-linux-module*): Add #:black-list parameter. [black-listed?, load-dependencies]: New procedures. Use them.
2016-01-16Move <boot-parameters> to (gnu system).Alex Kost
* guix/scripts/system.scm (previous-grub-entries) (display-system-generation): Use accessors instead of matching <boot-parameters>. (boot-parameters, boot-parameters?, boot-parameters-label) (boot-parameters-root-device, boot-parameters-kernel) (boot-parameters-kernel-arguments, read-boot-parameters): Move to... * gnu/system.scm: ... here. Export them.
2016-01-16gnu: Add python-hy.宋文武
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
2016-01-16gnu: Add python-rply.宋文武
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
2016-01-16gnu: Add python-astor.宋文武
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
2016-01-16gnu: Add python-clint.宋文武
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
2016-01-16gnu: Add python-args.宋文武
* gnu/packages.scm (python-args, python2-args): New variables.
2016-01-15gnu: Add khal.Leo Famulari
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15gnu: python-urwid: Disable failing test test_remove_watch_file.Leo Famulari
* gnu/packages/python.scm (python-urwid)[arguments]: Add 'disable-failing-test' phase. [source]: Use pypi-uri.
2016-01-15gnu: Update python-tzlocal to 1.2.Leo Famulari
* gnu/packages/python.scm (python-tzlocal): Update to 1.2. [source]: Use pypi-uri. [arguments]: Remove the custom 'unpack phase. [native-inputs]: Remove unzip, python-setuptools. [propagated-inputs]: Add python-pytz.
2016-01-15gnu: Add python-sphinxcontrib-newsfeed.Leo Famulari
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15gnu: Add python-icalendar.Leo Famulari
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15gnu: Add vdirsyncer.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15gnu: Add radicale.Leo Famulari
* gnu/packages/dav.scm (radicale): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15gnu: Add python-pytest-xprocess.Leo Famulari
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15gnu: Add python-wsgi-intercept.Leo Famulari
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15gnu: Add python-pytest-localserver.Leo Famulari
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15gnu: Add python-pytest-cache.Leo Famulari
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15gnu: Add python-execnet.Leo Famulari
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15gnu: Add python-apipkg.Leo Famulari
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15gnu: Add python-click-log.Leo Famulari
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15gnu: Add python-click-threading.Leo Famulari
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15gnu: Add python-requests-toolbelt.Leo Famulari
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15gnu: Add python-atomicwrites.Leo Famulari
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15gnu: glade: Update to 3.18.5.Ricardo Wurmus
* gnu/packages/gnome.scm (glade): Update to 3.18.5. [arguments]: Disable tests; add "fix-docbook" phase. [inputs]: Replace "gtk+-2" with "gtk+". [native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl"; replace "python" with "python-2".
2016-01-15gnu: openssh: Update to 7.1p2.Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."Mark H Weaver
This reverts commit 6d139e53b596ca154800d154b37fcd22741c629c.
2016-01-14gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14gnu: Add docker-compose.David Thompson
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14gnu: Add python-dockerpty.David Thompson
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14gnu: Add python-docker-py.David Thompson
* gnu/packages/docker.scm: New file. * Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14gnu: Add python-websocket-client.David Thompson
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14gnu: Add python-texttable.David Thompson
* gnu/packages/python.scm (python-texttable, python2-texttable): New variables.
2016-01-14gnu: Update python-jsonschema to 2.5.1.David Thompson
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1. [inputs]: Add python-vcversioner.
2016-01-14gnu: Add python-vcversioner.David Thompson
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New variables.
2016-01-14gnu: Add version 2.7 variant of python-requests.David Thompson
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14gnu: r-go-db: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add "r-annotationdbi".
2016-01-14gnu: r-sparsem: Add missing "gfortran" input.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14gnu: bowtie: Update to 2.2.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14gnu: gnupg: Add TOFU support.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14gnu: orfm: Update to 0.5.3.Ben Woodcroft
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3. [native-inputs]: Add inputs required for tests. [description]: Add commas.
2016-01-14gnu: Add ruby-bio-commandeer.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14gnu: Add ruby-systemu.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-13gnu: julia: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/julia.scm (julia): Update to 0.4.3. (libuv-julia): Update to 07730c4bd595.
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