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2018-11-21gnu: emacs-pdf-tools: Fix build with recent Poppler.Ludovic Courtès
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file. * gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21gnu: emacs-pdf-tools: Use 'git-fetch'.Ludovic Courtès
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to GIT-FETCH. [arguments]: In 'emacs-patch-variables' phase, make files writable.
2018-11-21gnu: casync: Fix build with glibc 2.28.Ludovic Courtès
* gnu/packages/patches/casync-renameat2-declaration.patch: New file. * gnu/packages/sync.scm (casync)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21gnu: ntk: Don't use bundled waf.Efraim Flashner
* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf. [arguments]: Add custom phase to replace vendored waf.
2018-11-21gnu: python-waf: Use a proper directory structure.Efraim Flashner
Fixes <https://bugs.gnu.org/25634>. * gnu/packages/python.scm (python-waf): Replace custom 'install phase to install "waf" binary into the bin directory. Remove the 'wrap phase. * gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase accordingly.
2018-11-21gnu: python-astroid: Update to 2.0.4.Efraim Flashner
* gnu/packages/python.scm (python-astroid): Update to 2.0.4. [source]: Switch to pypi source. [native-inputs]: Add python-dateutil, python-nose, python-pytest, python-pytest-runner. [arguments]: Add phase to remove spurious test failure. Update custom 'check phase. (python2-astroid): Update to 1.6.5. [source]: Use pypi source. [arguments]: Add phase to remove spurious test failure.
2018-11-20Merge branch 'master' into core-updatesMarius Bakke
2018-11-20gnu: Add missing patch to local.mk.Marius Bakke
This line was removed by accident in 0a41123f01d5d2466d6f533be3644ac8c9a2bdf9. * gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
2018-11-20gnu: libwebp: Update to 1.0.1.Marius Bakke
* gnu/packages/image.scm (libwebp): Update to 1.0.1.
2018-11-20gnu: fluidsynth: Update to 2.0.2.Marius Bakke
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.2.
2018-11-20gnu: python-joblib: Update home page.Marius Bakke
* gnu/packages/python.scm (python-joblib)[home-page]: Update to current.
2018-11-20gnu: python-joblib: Update to 0.13.0.Marius Bakke
* gnu/packages/python.scm (python-joblib): Update to 0.13.0. [source](snippet): Remove. [arguments]: Remove 'disable-failing-tests' phase. Add custom check phase. [native-inputs]: Remove PYTHON-NOSE, PYTHON-SPHINX, PYTHON-DOCUTILS and PYTHON-NUMPYDOC. Add PYTHON-PYTEST.
2018-11-20gnu: python-natsort: Update to 5.4.1.Marius Bakke
* gnu/packages/python.scm (python-natsort): Update to 5.4.1. [arguments]: Add #:modules. Replace 'check' phase with custom pytest invokation. [native-inputs]: Remove PYTHON-PYTEST-CACHE, PYTHON-PYTEST-FLAKES and PYTHON-PYTEST-PEP8. Add PYTHON-PYTEST and PYTHON-PYTEST-MOCK. (python2-natsort)[native-inputs]: Remove PYTHON2-ENUM34 and PYTHON2-MOCK.
2018-11-20gnu: z3: Update to 4.8.1.Marius Bakke
* gnu/packages/maths.scm (z3): Update to 4.8.1.
2018-11-20gnu: z3: Fetch source using git.Marius Bakke
* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
2018-11-19gnu: xonotic: Symlink to xonotic data instead of copying into xonotic.Pkill -9
* gnu/packages/games.scm (xonotic)[arguments]: Modify the phase 'install-data so it creates a symlink to xonotic's data instead of copying it into the xonotic package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-19gnu: Add autotalent.Thorsten Wilms
* gnu/packages/audio.scm (autotalent): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-19gnu: git-when-merged: Fix license.Ludovic Courtès
Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/version-control.scm (git-when-merged)[license]: Change to GPL2+.
2018-11-19gnu: r-shinyfiles: Update to 0.7.2.Roel Janssen
* gnu/packages/web.scm (r-shinyfiles): Update to 0.7.2.
2018-11-19gnu: r-mclust: Update to 5.4.2.Roel Janssen
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.2.
2018-11-19gnu: r-openssl: Update to 1.1.Roel Janssen
* gnu/packages/statistics.scm (r-openssl): Update to 1.1.
2018-11-19gnu: r-biocmanager: Update to 1.30.4.Roel Janssen
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.4.
2018-11-19gnu: r-ggeffects: Update to 0.7.0.Roel Janssen
* gnu/packages/cran.scm (r-ggeffects): Update to 0.7.0.
2018-11-19gnu: r-sjstats: Update to 0.17.2.Roel Janssen
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.2.
2018-11-19gnu: r-ggpubr: Update to 0.2.Roel Janssen
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.
2018-11-19gnu: r-recipes: Update to 0.1.4.Roel Janssen
* gnu/packages/cran.scm (r-recipes): Update to 0.1.4.
2018-11-19gnu: r-dimred: Update to 0.2.2.Roel Janssen
* gnu/packages/cran.scm (r-dimred): Update to 0.2.2.
2018-11-19gnu: r-ensembldb: Update to 2.6.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.2.
2018-11-19gnu: r-msnbase: Update to 2.8.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.1.
2018-11-19gnu: r-genomeinfodb: Update to 1.18.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.1.
2018-11-19gnu: Add clojure-algo-monads.Alex Vong
* gnu/packages/lisp.scm (clojure-algo-monads): New public variable.
2018-11-19gnu: Add clojure-tools-macro.Alex Vong
* gnu/packages/lisp.scm (clojure-tools-macro): New public variable.
2018-11-19gnu: Add clojure-algo-generic.Alex Vong
* gnu/packages/lisp.scm (clojure-algo-generic): New public variable.
2018-11-19gnu: Add clojure-core-match.Alex Vong
* gnu/packages/lisp.scm (clojure-core-match): New public variable.
2018-11-19gnu: Add clojure-instaparse.Alex Vong
* gnu/packages/lisp.scm (clojure-instaparse): New public variable.
2018-11-19guix: Add clojure-utils.Alex Vong
* guix/build/clojure-utils.scm: New file. * gnu/packages/lisp.scm (clojure)[arguments]: Use it. * Makefile.am (MODULES): Add it.
2018-11-19gnu: clojure: Use (guix build java-utils) to simplify build phases.Alex Vong
* gnu/packages/lisp.scm (clojure)[arguments]: Use 'ant-build-javadoc', 'install-jars' and 'install-javadoc' in build phases.
2018-11-19gnu: clojure: Refactor to ensure there's a single list of libraries.Alex Vong
This avoids having to update multiple lists. * gnu/packages/lisp.scm (clojure)[native-inputs]: Use new local variable. [arguments]: Adjust build phases accordingly.
2018-11-19gnu: clojure: Remove 'remove-archives' snippet.Alex Vong
This is no longer needed since clojure now makes official source releases in github. * gnu/packages/lisp.scm (clojure)[source]: Remove it. [native-inputs]: Remove it in 'submodule'. [arguments]: Adjust 'unpack-submodule-sources' phase accordingly.
2018-11-19gnu: clojure: Move from java to lisp.Alex Vong
* gnu/packages/java.scm (clojure): Move from here... * gnu/packages/lisp.scm (clojure): ...to here.
2018-11-19gnu: python-kivy: Update to 1.10.1Jovany Leandro G.C
* gnu/packages/python.scm (python-kivy): Update to 1.10.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-19gnu: help2man: Add 1.47.8.Ludovic Courtès
* gnu/packages/man.scm (help2man/latest): New variable.
2018-11-19gnu: fuse-exfat: Update to 1.3.0.Ludovic Courtès
* gnu/packages/linux.scm (fuse-exfat): Update to 1.3.0.
2018-11-19gnu: diffoscope: Update to 105.Ludovic Courtès
* gnu/packages/package-management.scm (diffoscope): Update to 105.
2018-11-18gnu: Add libfdk 'FDK AAC' library.Leo Famulari
* gnu/packages/audio.scm (libfdk): New variable.
2018-11-18vm: Remove explicit calls to 'operating-system-derivation'.Ludovic Courtès
* gnu/system/vm.scm (iso9660-image): Change 'os-drv' to 'os' and remove call to 'operating-system-derivation'. (system-qemu-image): Likewise. (system-qemu-image/shared-store): Likewise.
2018-11-18system: De-monadify 'operating-system-bootcfg'.Ludovic Courtès
* gnu/system.scm (operating-system-bootcfg): Remove 'mlet*' and 'lower-object' call. * gnu/system/vm.scm (system-disk-image) (system-qemu-image/shared-store): Adjust accordingly. * guix/scripts/system.scm (perform-action): Add 'lower-object' call for BOOTCFG.
2018-11-18system: Please Emacs.Ludovic Courtès
* gnu/system.scm (operating-system-bootcfg): Remove opening parenthesis at the beginning of the line in the docstring to placate Emacs.
2018-11-18system: De-monadify 'operating-system-boot-parameters'.Ludovic Courtès
* gnu/system.scm (operating-system-boot-parameters): Turn to direct style instead of monadic. (operating-system-bootcfg): Adjust accordingly. (operating-system-boot-parameters-file): Likewise.
2018-11-18linux-initrd: Return file-like objects instead of monadic values.Ludovic Courtès
This is an incompatible change visible to users via the 'initrd' field of 'operating-system'. However, assuming the user's 'initrd' value tail-calls to 'raw-initrd' or 'base-initrd', the switch to non-monadic style is invisible. * gnu/system/linux-initrd.scm (expression->initrd): Use 'computed-file' instead of 'gexp->derivation'. (raw-initrd, base-initrd): Adjust docstring to mention non-monadic return. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Adjust accordingly. * gnu/system.scm (operating-system-directory-base-entries) (operating-system-initrd-file) (operating-system-boot-parameters): Adjust accordingly. * doc/guix.texi (operating-system Reference) (Initial RAM Disk): Update.
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