Age | Commit message (Collapse) | Author |
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* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
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* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.1.
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* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
"openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
'set-environment-variables, which is only needed when ATLAS is used.
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* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
"set-environment-variables" with "configure-openblas".
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* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
inputs, because OpenBLAS does not include lapack functions.
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* gnu/packages/audio.scm (lv2): Update to 1.12.0.
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* gnu/packages/screen.scm (screen): Update to 4.3.0.
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* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
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* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
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* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
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* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Add
'wrap-program' phase.
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* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Use
'modify-phases' instead of 'alist-cons-before'.
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* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
(dist_patch_DATA): Add patches.
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* gnu/packages/web.scm (perl-catalyst-authentication-store-dbix-class):
New variable.
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* gnu/packages/web.scm (perl-catalyst-plugin-authorization-roles): New
variable.
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* gnu/packages/perl.scm (perl-set-object): New variable.
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* gnu/packages/music.scm (powertabeditor): New variable.
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* gnu/packages/check.scm (catch-framework): Update to 1.1.3.
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* gnu/packages/audio.scm (rtmidi): New variable.
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* gnu/packages/xml.scm (pugixml): New variable.
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* gnu/packages/web.scm (rapidjson): New variable.
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* gnu/packages/code.scm (withershins): New variable.
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Fixes <http://bugs.gnu.org/20791>.
Reported by Benz Schenk <benz.schenk@uzh.ch>.
* gnu/system/install.scm (installation-services): Add #:rules argument for
'udev-service'.
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* gnu/packages/bioinformatics.scm (orfm): New variable.
Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
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* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
with IcedTea6.
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* gnu/packages/bioinformatics.scm (couger): New variable.
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* gnu/packages/machine-learning.scm (randomjungle): New variable.
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* gnu/packages/machine-learning.scm (python-libsvm): New variable.
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* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
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* gnu/packages/haskell.scm (ghc)[arguments]: Rename
'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
Patch source files that reference /bin/sh.
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This reverts commit 4f467e33de0b64b1afd935d14ec6a4839e03bdfc.
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* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
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* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
[source]: Add 'file-name' field.
[native-inputs]: Add HELP2MAN.
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* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
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* gnu/packages/gnome.scm (librest): New variable.
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* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
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* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
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* gnu/packages/cups.scm (cups): Update to 2.0.3.
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* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
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* gnu/build/install.scm (populate-root-file-system): Delete system-1-link
under TARGET, not under /. Use 'catch' and check for EEXIST instead of
(false-if-exception (delete-file ...)).
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* gnu/packages/databases.scm (mysql): Update to 5.6.25.
[source]: Use 'version-major+minor'.
[build-system]: Change to cmake-build-system. Adjust arguments
accordingly.
[inputs]: Add libaio. Remove procps. Move perl to 'native-inputs'.
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* gnu/packages/ocaml.scm (proof-general): New variable.
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Suggested by Thomas Schwinge <thomas@codesourcery.com>.
* gnu/system/install.scm (self-contained-tarball): Remove
"/root/.guix-profile" from the 'tar' arguments.
* doc/guix.texi (Binary Installation): Add a step to create
~root/.guix-profile.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
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* gnu/packages/gnome.scm (evince): Update to 3.16.1.
[inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.
Co-authored-by: David Hashe <david.hashe@dhashe.com>
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* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
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* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
"atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
OpenBLAS.
Modified-By: Mark H Weaver <mhw@netris.org>
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* gnu/packages/patches/icecat-CVE-2015-0797.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1. Remove patches.
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