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2020-03-27services/nfs: Replace nfs-version with nfs-versions.Ricardo Wurmus
Instead of accepting a string for just one protocol version accept a list of supported versions. * gnu/services/nfs.scm (<nfs-configuration>)[nfs-version]: Remove field and replace... [nfs-versions]: ...with this new field. (nfs-shepherd-services): Pass as many "--nfs-version" options as there are supported versions. * doc/guix.texi (Network File System): Document nfs-versions.
2020-03-27gnu: rust: Add 1.39Jakub Kądziołka
* gnu/packages/rust.scm (rust-1.39): New variable. (%cargo-reference-hash): Add a comment explaining the role of the variable.
2020-03-27gnu: rust: Add 1.38Jakub Kądziołka
All packages are still built with rustc 1.37, but users will see rustc 1.38 in their profiles, and packages that require newer compiler versions will be possible to add. * gnu/packages/rust.scm (rust-1.31): Factor out the patch-command-exec-tests phase to a separate procedure. (patch-command-exec-tests-phase): New procedure. (rust): Rename to rust-1.37, make rust an alias. (rust-1.38): New variable.
2020-03-27gnu: asymptote: Update to 2.65.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
2020-03-27gnu: r-multiassayexperiment: Update to 1.12.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27gnu: r-locfit: Update to 1.5-9.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27gnu: r-class: Update to 7.3-16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27gnu: r-xgboost: Update to 1.0.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27gnu: r-rjava: Update to 0.9-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27gnu: r-sf: Update to 0.9-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-0. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-bayestestr: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-hdf5r: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-ggally: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-26gnu: guix-data-service: Update to 0.0.1-19.d1c243f.Christopher Baines
These changes support the guix-data-service-backup-database and guix-data-service-create-small-backup scripts. These are shell scripts, so require coreutils from the build environment at runtime as well as binaries from postgresql, ephemeralpg and optionally util-linux (for ionice and renice). * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f. [arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the 'install phase to wrap all bin files with some inputs as well. [inputs]: Add util-linux, include ephemeralpg from native-inputs and switch postgresql for postgresql-11. [native-inputs]: Move ephemeralpg to inputs.
2020-03-26gnu: Add python-json5.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-json5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26gnu: Add python-pytest-check-links.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26vm: Distinguish between success and failure of the guest code.Ludovic Courtès
Fixes <https://bugs.gnu.org/34276>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]: Produce '/xchg/.exit-status' file upon success. * gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status' once QEMU has completed and respond accordingly.
2020-03-26gnu: Add ROPgadget.Jakub Kądziołka
* gnu/packages/cybersecurity.scm: New file. (ropgadget): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26gnu: java-tomcat: Update to 8.5.53.Björn Höfling
This fixes CVE-2020-1938 ("Ghostcat"). * gnu/packages/web.scm (java-tomcat): Update to 8.5.53. [properties]: Add cpe-name.
2020-03-26gnu: icu4c: Explicitly add patch flags in replacement package.Marius Bakke
This is to prevent a build failure when this gets merged to 'core-updates' which does not have any patch-flags to inherit. * gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26gnu: help2man: Update to 1.47.13.Marius Bakke
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26gnu: Add python-pywinrm.Alexandros Theodotou
* gnu/packages/python-xyz.scm (python-pywinrm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-requests_ntlm.Alexandros Theodotou
* gnu/packages/python-web.scm (python-requests_ntlm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-ntlm-auth.Alexandros Theodotou
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-kerberos.Alexandros Theodotou
* gnu/packages/python-crypto.scm (python-kerberos): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Update sambamba to 0.7.1.Roel Janssen
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1; Remove unneeded undead input.
2020-03-26gnu: Add 7kaa.Naga Malleswari
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26gnu: boinc-client: Update to 7.16.5.Efraim Flashner
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26gnu: boinc-server: Fix build.Efraim Flashner
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl with openssl-1.0, mariadb with mariadb:dev.
2020-03-26gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.Ludovic Courtès
Fixes <https://bugs.gnu.org/24076>. Reported by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/packages/patches/gnupg-default-pinentry.patch: New file. * gnu/packages/gnupg.scm (gnupg)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26gnu: youtube-viewer: Don't build gtk3 front-end.Efraim Flashner
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update module-build-flags to only build gtk2 front-end.
2020-03-26gnu: youtube-viewer: Update to 3.7.5.Efraim Flashner
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5. [inputs]: Add perl-json-xs.
2020-03-26tests: install: Add %test-gui-installed-desktop-os-encrypted.Mathieu Othacehe
* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services, (installation-target-os-for-gui-tests): new procedure, (installation-target-desktop-os-for-gui-tests): new procedure, (guided-installation-test): add target-os and desktop? arguments. Use target-os instead of the previous os variable. Pass desktop? argument to gui-test-program. (%test-gui-installed-os): Adapt accordingly, (%test-gui-installed-os-encrypted): ditto, (%test-gui-installed-desktop-os-encrypted): new exported variable.
2020-03-26installer: tests: Use a filter to select desktop-environments.Mathieu Othacehe
* gnu/installer/tests.scm (choose-services): Turn desktop-environments list into a choose-desktop-environment procedure. This way, it is easier to select all desktop-environments or none, in the same way as choose-network-service? and choose-network-management-tool? arguments.
2020-03-26gnu: emacs-helm-exwm: Update to 0.0.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26gnu: r-argon2: Fix case in synopsis and use full sentence in description.Ricardo Wurmus
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case. [description]: Use full sentence.
2020-03-26gnu: r-getpass: Change case in synopsis and adjust indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-getpass): Adjust indentation. [synopsis]: Do not capitalize all words.
2020-03-26gnu: r-remoter: Fix indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-remoter): Fix indentation.
2020-03-26gnu: r-remoter: Use lower case in the synopsis.Ricardo Wurmus
* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
2020-03-25gnu: linux-libre-5.4-source: Add patch to support pinebook pro.Vagrant Cascadian
* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/linux (linux-libre-5.4-source): Add patch.
2020-03-25gnu: linux-libre: Update deblob scripts.Mark H Weaver
* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
2020-03-25gnu: linux-libre: Update to 5.4.28.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28. (linux-libre-5.4-pristine-source): Update hash.
2020-03-25gnu: linux-libre@4.19: Update to 4.19.113.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113. (linux-libre-4.19-pristine-source): Update hash.
2020-03-25gnu: icu4c: Fix CVE-2020-10531.Leo Famulari
* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[replacement]: New field. (icu4c/fixed): New variable.
2020-03-25gnu: Add r-remoter.Todor Kondić
* gnu/packages/cran.scm (r-remoter): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25gnu: Add r-getpass.Todor Kondić
* gnu/packages/cran.scm (r-getpass): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25gnu: Add r-argon2.Todor Kondić
* gnu/packages/cran.scm (r-argon2): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25gnu: Add emacs-chronometrist.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
2020-03-25gnu: abseil-cpp: Update to 20200225.1.Ricardo Wurmus
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
2020-03-25gnu: gnu-pw-mgr: Build reproducibly.Ludovic Courtès
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove AUTOGEN so that man pages are not regenerated with a fresh date.
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