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2017-08-17gnu: Add r-fastmatch.Ricardo Wurmus
* gnu/packages/cran.scm (r-fastmatch): New variable.
2017-08-17gnu: Add r-getoptlong.Ricardo Wurmus
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17gnu: Add r-dendextend.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17gnu: Add r-compare.Ricardo Wurmus
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17gnu: Add r-png.Ricardo Wurmus
* gnu/packages/image.scm (r-png): New variable.
2017-08-17gnu: Add r-powerlaw.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17gnu: Add r-circlize.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17gnu: Add r-globaloptions.Ricardo Wurmus
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17gnu: Add r-shape.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17gnu: Add r-calibrate.Ricardo Wurmus
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17gnu: Add r-auc.Ricardo Wurmus
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17gnu: Add r-annotationhub.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17gnu: Add r-interactivedisplaybase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17gnu: american-fuzzy-lop: Update to 2.49b.Efraim Flashner
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17gnu: american-fuzzy-lop: Add support for non-Intel architectures.Efraim Flashner
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for non-Intel targets. [arguments]: On non-Intel systems, add phase to disable non-Intel architecture warning and remove incompatible binaries.
2017-08-17gnu: Add mgba.Nicolas Goaziou
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17gnu: cuirass: Update to 0.0.1-7.6f85bc0.Ricardo Wurmus
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0. [arguments]: Add guile-git and guile-bytestructures to the load path. [inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17gnu: python-cython: Update to 0.26.Efraim Flashner
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26. [source]: Remove patch. * gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17gnu: Add fbreader.Danny Milosavljevic
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17gnu: Add liblinebreak.Danny Milosavljevic
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-16gnu: python-cryptography-vectors: Update to 2.0.3.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16gnu: python-cryptography: Update to 2.0.3.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16gnu: limnoria: Update to 2017.08.03.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16gnu: cbatticon: Update to 1.6.6.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16gnu: Add gpick.Julien Lepiller
* gnu/packages/image.scm (gpick): New variable.
2017-08-16gnu: fossil: Update to 2.2.ng0
* gnu/packages/version-control.scm (fossil): Update to 2.2. [source]: Add uri for older versions. [arguments]: Enable previously disabled test.
2017-08-16gnu: connman: Update to 1.35.Efraim Flashner
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16gnu: Add ltris.Kei Kebreau
* gnu/packages/games.scm (ltris): New variable.
2017-08-16gnu: Add ghc-gitrev.Alex Vong
* gnu/packages/haskell.scm (ghc-gitrev): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-geniplate-mirror.Alex Vong
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-monadplus.Alex Vong
* gnu/packages/haskell.scm (ghc-monadplus): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-fail.Alex Vong
* gnu/packages/haskell.scm (ghc-fail): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-edisoncore.Alex Vong
* gnu/packages/haskell.scm (ghc-edisoncore): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-edisonapi.Alex Vong
* gnu/packages/haskell.scm (ghc-edisonapi): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-murmur-hash.Alex Vong
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-data-hash.Alex Vong
* gnu/packages/haskell.scm (ghc-data-hash): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: pspp: Update to 0.11.0.Efraim Flashner
This fixes CVE-2017-10791, CVE-2017-10792. * gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16gnu: Add ghc-equivalence.Alex Vong
* gnu/packages/haskell.scm (ghc-equivalence): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-boxes.Alex Vong
* gnu/packages/haskell.scm (ghc-boxes): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-edit-distance.Alex Vong
* gnu/packages/haskell.scm (ghc-edit-distance): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-stmonadtrans.Alex Vong
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: Add ghc-strict.Alex Vong
* gnu/packages/haskell.scm (ghc-strict): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: cpphs: Update to 1.20.8.Alex Vong
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: font-google-noto: Use font-build-system.ng0
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use font-build-system. [source]: Use url-fetch/zipbomb. [arguments]: Remove it. [native-inputs]: Remove it. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16gnu: r-mzr: Fix building on aarch64 and armhf.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16gnu: hdf4: Fix building on aarch64.Efraim Flashner
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve detection and support for aarch64-linux.
2017-08-15gnu: cgit: Don't build cgit's special 'git:src' input.Leo Famulari
This special version of Git is only used within the build process of cgit. We don't need to build it otherwise, so the package is removed with this commit. * gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10 package with an origin reference of the source code. (git@2.10): Remove variable.
2017-08-15gnu: Fix memcached service startup.Christopher Baines
Memcached changes to the memcached user from root before writing the PID file. This means that it must be able to write the PID file as the memcached user. To make this work, create the /var/run/memcached directory when the service starts, make it owned by memcached, and change memcached to write the PID file to /var/run/memcached/pid. This wasn't picked up by the system test as the "service running" part was too permissive, and only failed on an error. Instead, test the response from calling start-service and check that the PID is a number. * gnu/services/databases.scm (memcached-activation): New variable. (memcached-shepherd-service): Change PID file location. (memcached-service-type): Extend the activation-service-type. * gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service running" test to check the response from the shepherd.
2017-08-15gnu: Add dssi.Danny Milosavljevic
* gnu/packages/music.scm (dssi): New variable.
2017-08-15gnu: Add emacs-highlight-symbol.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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