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2020-04-28gnu: r-powerlaw: Update to 0.70.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6. [propagated-inputs]: Remove r-vgam; add r-pracma. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-shinyfiles: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
2020-04-28gnu: Add r-ibreakdown.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibreakdown): New variable.
2020-04-28gnu: Add r-ingredients.Ricardo Wurmus
* gnu/packages/cran.scm (r-ingredients): New variable.
2020-04-28gnu: r-purrr: Update to 0.3.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-plotrix: Update to 3.7-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
2020-04-28gnu: r-withr: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-xml2: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
2020-04-28gnu: r-dbplyr: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-tibble: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
2020-04-28gnu: r-foreign: Update to 0.8-78.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
2020-04-28gnu: r-with-tests, r-minimal: Update to 4.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0. (r-with-tests)[arguments]: Add phase "set-locales". [native-inputs]: Add texlive-ae, texlive-inconsolata, and texlive-latex-xkeyval to texlive-union. [inputs]: Replace pcre with pcre2.
2020-04-28gnu: stellarium: Update to 0.20.1.Björn Höfling
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
2020-04-27gnu: Update minimap2 to 2.17.Roel Janssen
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27gnu: Add sbcl-stumpwm-swm-gaps.Oleg Pykhalov
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
2020-04-27gnu: tarsplitter: Fix typo in description (spilt/split).Vincent Legoll
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
2020-04-27gnu: Add wf-recorder.Alex McGrath
* gnu/packages/video.scm (wf-recorder): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-27gnu: ktsuss: Use setuid "su" and "sudo" commands.Raghav Gururajan
This has ktsudo actually gain root access. * gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo} file names, use the setuid' verrsions.
2020-04-27gnu: herbstluftwm: Update to 0.8.1Boris A. Dekshteyn
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27gnu: fldigi: Update to 4.1.12.Guillaume Le Vaillant
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
2020-04-27file-systems: mount the PID cgroup filesystem.Jakub Kądziołka
* gnu/system/file-systems.scm (%control-groups): Add "pids". * gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO. This has allowed me to make a specific configuration of nsjail work.
2020-04-27gnu: Add python-scikit-rebate.Roel Janssen
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
2020-04-27gnu: Add python-deeptools.Roel Janssen
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
2020-04-27gnu: Add python-deeptoolsintervals.Roel Janssen
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
2020-04-27gnu: Add python-bitarray.Roel Janssen
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
2020-04-27gnu: Add r-cummerbund.Roel Janssen
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
2020-04-27gnu: Add r-inum.Roel Janssen
* gnu/packages/cran.scm (r-inum): New variable.
2020-04-27gnu: Add r-ggpmisc.Roel Janssen
* gnu/packages/cran.scm (r-ggpmisc): New variable.
2020-04-27gnu: Add r-coverageview.Roel Janssen
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
2020-04-27gnu: Add peek.Ricardo Wurmus
* gnu/packages/video.scm (peek): New variable.
2020-04-27gnu: emacs-org-reveal: Fix syntax error in description.Ricardo Wurmus
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo syntax error.
2020-04-27gnu: Add texlive-inconsolata.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
2020-04-27gnu: Add r-bsgenome-hsapiens-ucsc-hg38.Roel Janssen
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
2020-04-27gnu: Add r-karyoploter.Roel Janssen
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
2020-04-27gnu: Add r-bezier.Roel Janssen
* gnu/packages/cran.scm (r-bezier): New variable.
2020-04-27gnu: Add r-ideoviz.Roel Janssen
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27gnu: Add r-ecp.Roel Janssen
* gnu/packages/cran.scm (r-ecp): New variable.
2020-04-27gnu: Add r-reordercluster.Roel Janssen
* gnu/packages/cran.scm (r-reordercluster): New variable.
2020-04-27gnu: liblinphone: Move documentation and tester to separate outputs.Maxim Cournoyer
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester" outputs. [phases]: Add a separate-outputs phase. Move the glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
2020-04-27gnu: liblinphone: Fix the input type of some dependencies.Maxim Cournoyer
Libraries being linked to such as libxml2, libiconv and zlib should appear as 'inputs' rather than 'native-inputs'. * gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv, libxml2 and zlib to... [inputs]: ...here. Move eudev, python-pystache and python-six to native-inputs.
2020-04-27gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.Maxim Cournoyer
Icon themes and theme engines are best left for the users to select and install themselves. * gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme. [propagated-inputs]: Remove murrine.
2020-04-26gnu: Add loadable module to wireguard-linux-compat.Brice Waegeneire
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace 'gnu-build-system' by 'linux-module-build-system'. [outputs]: Add 'kernel-patch'. [arguments]: Adjust the build system. Add phases 'change-directory' and 'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to 'install-patch'. [description]: Mention the loadable module. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-26services: system: Initial entries are non-monadic.Ludovic Courtès
* gnu/system.scm (operating-system-directory-base-entries): Return a regular, non-monadic value. * gnu/services.scm (system-derivation): Adjust accordingly. * gnu/system/linux-container.scm (container-essential-services): Likewise.
2020-04-26services: profile: Use a declarative profile.Ludovic Courtès
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of 'profile-derivation'.
2020-04-26system: 'operating-system-directory-base-entries' uses 'profile'.Ludovic Courtès
* gnu/system.scm (operating-system-directory-base-entries): Use a declarative profile instead of 'profile-derivation'.
2020-04-26gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.Roel Janssen
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.Roel Janssen
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New variable.
2020-04-26gnu: Add hackneyed-x11-cursors.Maxim Cournoyer
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
2020-04-26gnu: Add r-motifbreakr.Roel Janssen
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
2020-04-26gnu: Add r-motifdb.Roel Janssen
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
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