Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
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* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
variable.
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* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
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* gnu/packages/backup.scm (borg): Update to 1.0.1.
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.3.
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* gnu/packages/python.scm (python-werkzeug): Update to 0.11.5.
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* gnu/packages/python.scm (python-pytest-localserver)[native-inputs]:
Remove zip.
[proapgated-inputs]: Move python-werkzeug ...
[inputs]: ... to here.
[propagated-inputs]: Move python-pytest, python-requests, python-six ...
[native-inputs]: ... to here.
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* gnu/packages/python.scm (python-pytest-cache)[propagated-inputs]: Move
python-execnet ...
[inputs]: ... to here. Add python-apipkg, python-py, python-pytest.
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* gnu/packages/python.scm (python-execnet)[propagated-inputs]: Move
python-apipkg ...
[inputs]: ... to here.
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* gnu/packages/python.scm (python-apipkg)[native-inputs]: Move
python-pytest.
[inputs]: ... to here.
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* gnu/packages/python.scm (python-pytest-xdist)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Move python-execnet, python-py, python-pytest ...
[inputs]: ... to here. Add python-apipkg.
[properties]: Define python2-pytest-xdist.
(python2-pytest-xdist): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-pytest-runner)[properties]: Define
python2-pytest-runner.
[native-inputs]: Remove python-setuptools.
[home-page]: Project has moved to Github.
(python2-pytest-runner)[native-inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-pytest-cov): Update to 2.2.1.
[native-inputs]: Remove python-setuptools. Move python-coverage,
python-pytest ...
[inputs]: ... to here.
[properties]: Define python2-pytest-cov.
(python-pytest-cov): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-parse): Update to 1.6.6.
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* gnu/packages/python.scm (python-tzlocal): Update to 1.2.2.
[native-inputs]: Move python-pytz ...
[inputs]: ... to here.
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* gnu/packages/python.scm (parsedatetime): Update to 2.1.
[native-inputs]: Remove python-setuptools, add python-nose, python-pyicu.
[properties]: Define python2-variant.
(python2-parsedatetime): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.2.
[inputs]: Remove python-setuptools.
[properties]: Define python2-dateutil-2.
(python2-dateutil-2): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-keyring): Update to 8.7.
[native-inputs]: Remove python-setuptools, python-mock.
[properties]: Define python2-keyring.
(python2-keyring): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
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* gnu/packages/python.scm (python-h5py): Update to 2.6.0.
[inputs]: Add python-six.
[native-inputs]: Add python-pkgconfig.
[properties]: Define python2-h5py.
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* gnu/packages/python.scm (python-pytz): Update to 2016.3.
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* gnu/packages/python.scm (python-babel): Update to 2.3.2.
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* gnu/packages/python.scm (python-ccm): Update to 2.1.6.
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* gnu/packages/python.scm (python-httplib2): Update to 0.9.2.
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* gnu/packages/python.scm (python-paramiko): Update to 1.16.0.
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* gnu/packages/video.scm (youtube-dl): Update to 2016.04.06.
[native-inputs]: Remove python-setuptools.
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* gnu/packages/python.scm (python-requests)[propagated-inputs]: Move
python-py, python-pytest, python-pytest-cov, python-wheel from here...
[native-inputs]: ... to here.
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* gnu/packages/video.scm (livestreamer)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Remove python-singledispatch.
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* gnu/packages/mail.scm (offlineimap)[inputs]: Add python2-pysqlite.
[arguments]: Wrap binary with python2-pysqlite's path.
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* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
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* gnu/packages/maths.scm (c-graph): New variable.
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* gnu/packages/ibus.scm (ibus-anthy): New variable.
Co-authored-by: 宋文武 <iyzsong@gmail.com>.
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* gnu/packages/anthy.scm: New file.
* gnu-system.am: Add it.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
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* gnu/packages/gnustep.scm (wmclock): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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gnu/packages/pcre.scm (pcre2): Update to 10.21.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
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* gnu/packages/algebra.scm (singular)[source]: Update upstream hash. See
http://www.singular.uni-kl.de:8002/trac/ticket/754 .
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.21.
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* gnu/packages/databases.scm (redis): Update to 3.0.7.
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* gnu/packages/python.scm (python-pkgconfig)[license]: Fix prefix.
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* gnu/packages/networking.scm (macchanger): New variable.
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* gnu/packages/node.scm (node): Update to 5.10.0.
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* gnu/packages/libevent.scm (libuv): Update to 1.8.0.
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* gnu/packages/abiword.scm (abiword.scm)[arguments]: Add "epub" and
"goffice" to "enable-plugins" configure flag.
[inputs]: Add goffice, libchamplain, telepathy-glib.
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* gnu/packages/python.scm (python-cython): Update to 0.24.
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* gnu/packages/python.scm (python-cysignals, python2-cysignals): New
variables.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
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* gnu/packages/messaging.scm (hexchat): Update to 2.12.0.
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* gnu/packages/gnustep.scm (wmcpuload): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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