Age | Commit message (Collapse) | Author |
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* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
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* gnu/packages/gd.scm (gd)[properties]: New field.
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* guix/scripts/lint.scm (package-name->cpe-name): Remove.
(package-vulnerabilities): Honor 'cpe-name' and 'cpe-version'
properties.
* gnu/packages/grub.scm (grub)[properties]: New field.
* gnu/packages/gnuzilla.scm (icecat)[properties]: Add 'cpe-name' and
'cpe-version'.
* doc/guix.texi (Invoking guix lint): Mention 'cpe-name'.
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* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
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* gnu/packages/emacs.scm (emacs-constants): Change to versioned repository and
update to 2.6.
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* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
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* gnu/packages/emacs.scm (emacs-constants): Move 'home-page' above. Use
it in 'uri'.
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* gnu/packages/emacs.scm (uncompressed-file-fetch): Remove dependency on
GZIP.
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* gnu/packages/code.scm (cflow): Update to 1.5.
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Also, I previously committed to this repository in 2015; add self to copyright
headers for that year too.
* gnu/packages/emacs.scm (geiser-next): New variable.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
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* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.18.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
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* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
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* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-1.
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* gnu/packages/version-control.scm (libgit2): Update to 0.24.1.
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* gnu/packages/tmux.scm (tmux): Update to 2.2.
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* gnu/packages/finance.scm (ledger): New variable.
Co-authored-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/textutils.scm (utfcpp): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/plotutils.scm (asymptote)[arguments]: Add a phase to
install Emacs-Lisp files in an appropriate place.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/mail.scm (%mu-gtester-patch): Remove.
(mu): Update to 0.9.16.
[source]: Remove 'patches'.
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* gnu/packages/mail.scm (mu)[arguments]: Add 'install-emacs-autoloads'
phase. Use appropriate modules and imported-modules.
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* gnu/packages/mail.scm (mu)[arguments]: Add 'patch-configure.ac' phase
to avoid adding "mu4e" sub-directory to 'lispdir' variable.
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* gnu/packages/mail.scm (mu): Use 'modify-phases'.
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* gnu/packages/python.scm (python-pandas): Update to 0.18.1.
[native-inputs]: Remove python-setuptools.
[properties]: Define python2-pandas.
(python2-pandas)[native-inputs]: Add python2-setuptools.
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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