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2022-11-24gnu: Add qt-creator.Maxim Cournoyer
* gnu/packages/qt.scm (qt-creator): New variable. wip
2022-11-24gnu: qttools: Add clang-15 as input.Maxim Cournoyer
* gnu/packages/qt.scm (qttools) [inputs]: Add clang-15, so that the qdoc command can be built. [phases] {sanity-check}: New phase, to guard against a problem that proved difficult to isolate.
2022-11-24gnu: Add clazy.Maxim Cournoyer
* gnu/packages/qt.scm (clazy): New variable.
2022-11-24gnu: Add qttranslations.Maxim Cournoyer
* gnu/packages/qt.scm (qttranslations): New variable.
2022-11-24gnu: emacs-projectile: Activate tests.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-projectile)[source]: Use Git repository instead of released tarball to get the test file. [arguments]: Activate tests, and fix a failing one.
2022-11-24gnu: emacs-projectile: Improve description.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-projectile)[description]: Use proper capitalization, expand some words, add Texinfo markup, remove fancy typography.
2022-11-24gnu: emacs-projectile: Update to 2.7.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.7.0.
2022-11-24gnu: emacs-kind-icon: Update to 0.1.8.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.8.
2022-11-24gnu: emacs-vertico: Update to 0.29.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.29.
2022-11-24gnu: emacs-eldev: Update to 1.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3.
2022-11-24gnu: emacs-detached: Update to 0.10.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.0.
2022-11-24gnu: emacs-org-modern: Update to 0.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.6.
2022-11-24gnu: r-ancombc: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1. [propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans, r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors, r-singlecellexperiment, r-summarizedexperiment, and r-treesummarizedexperiment.
2022-11-24gnu: Add r-mia.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mia): New variable.
2022-11-24gnu: Add r-treesummarizedexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
2022-11-24gnu: Add r-cvxr.Ricardo Wurmus
* gnu/packages/cran.scm (r-cvxr): New variable.
2022-11-24gnu: Add r-ecosolver.Ricardo Wurmus
* gnu/packages/cran.scm (r-ecosolver): New variable.
2022-11-24gnu: Add r-scs.Ricardo Wurmus
* gnu/packages/cran.scm (r-scs): New variable.
2022-11-24gnu: Add r-osqp.Ricardo Wurmus
* gnu/packages/cran.scm (r-osqp): New variable.
2022-11-24gnu: Add r-ancombc.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
2022-11-24gnu: linux-libre 4.19: Update to 4.19.266.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266. (linux-libre-4.19-pristine-source): Update hash.
2022-11-24gnu: r-aims: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
2022-11-24gnu: Add r-aims.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-aims): New variable.
2022-11-24gnu: r-alevinqc: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
2022-11-24gnu: Add r-alevinqc.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
2022-11-24gnu: r-alphabeta: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
2022-11-24gnu: Add r-alphabeta.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
2022-11-24gnu: r-asafe: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
2022-11-24gnu: Add r-asafe.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-asafe): New variable.
2022-11-24gnu: r-arrayexpress: Update to 1.57.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
2022-11-24gnu: Add r-arrayexpress.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
2022-11-24gnu: r-scuttle: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
2022-11-24gnu: r-rgreat: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
2022-11-24gnu: r-bioccheck: Update to 1.34.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
2022-11-24gnu: r-dose: Update to 3.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
2022-11-24gnu: r-shortread: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
2022-11-24gnu: r-chipseeker: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
2022-11-24gnu: r-deconvr: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
2022-11-24gnu: r-bambu: Update to 3.0.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
2022-11-24gnu: r-minimal: Simplify build phase.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minimal)[arguments]: Simplify phase "remove-extraneous-references".
2022-11-24gnu: r-minimal: Use %store-directory instead of /gnu/store.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minimal)[arguments]: Use %store-directory instead of hard-coding "/gnu/store" prefix.
2022-11-24gnu: r-with-tests: Update to 4.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.2. [arguments]: Patch DESCRIPTION file of "tools" package to avoid non-deterministic line break.
2022-11-24gnu: r-with-tests: Drop labels from input lists.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Drop input labels. [inputs]: Same. (r-minimal)[arguments]: Remove lookup of "texlive" package.
2022-11-24gnu: r-ggtern: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.0.
2022-11-24gnu: r-phyloseq: Update to 1.42.0.zimoun
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0.
2022-11-24gnu: r-tximeta: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0.
2022-11-24gnu: r-tricycle: Update to 1.6.0.zimoun
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0.
2022-11-24gnu: r-tcgabiolinks: Update to 2.25.3.zimoun
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3.
2022-11-24gnu: r-biscuiteer: Update to 1.12.0.zimoun
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0.
2022-11-24gnu: r-omnipathr: Update to 3.5.25.zimoun
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25. [propagated-inputs]: Add r-rmarkdown and r-rvest.
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