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2018-06-16gnu: Add java-eclipse-jetty-webapp.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-webapp): New variable.
2018-06-16gnu. Add java-eclipse-jetty-xml-9.2.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-xml-9.2): New variable.
2018-06-16gnu: Add java-eclipse-jetty-xml.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
2018-06-16gnu: java-eclipse-jetty-security-9.2: Ignore test error.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]: Ignore one failing test.
2018-06-16gnu: pigx-chipseq: Update to 0.0.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
2018-06-15gnu: BIND: Fix CVE-2018-5738.Leo Famulari
* gnu/packages/patches/bind-CVE-2018-5738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dns.scm (isc-bind)[source]: Use it.
2018-06-15gnu: grub: Fix build on i686.Mark H Weaver
Fixes <https://bugs.gnu.org/31380>. * gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper" and "binutils". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15system: Add os-with-u-boot.Danny Milosavljevic
* gnu/system/install.scm (os-with-u-boot): New procedure. * gnu/packages/bootloaders.scm (make-u-boot-package): Export. * doc/guix.texi (Building the Installation Image for ARM Boards): New subsection.
2018-06-15gnu: Add shadowsocks.fis
* gnu/packages/networking.scm (shadowsocks): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15gnu: cpuid: Update to 20180519.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (cpuid): Update to 20180519.
2018-06-15gnu: light: Return #t from phase.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase with #t.
2018-06-15gnu: light: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (light): Update to 1.1. [source]: Switch to GIT-FETCH.
2018-06-15gnu: f2fs-tools: Update to 1.10.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
2018-06-15gnu: spice-protocol: Update to 0.12.14.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
2018-06-15gnu: python-pyrfc3339: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
2018-06-15gnu: gource: Update to 0.49.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (gource): Update to 0.49.
2018-06-15gnu: perl-xml-libxml-simple: Update to 0.99.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
2018-06-15gnu: fcitx-configtool: Update to 0.4.10.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
2018-06-15gnu: fcitx: Update to 4.2.9.6.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6. [native-inputs]: Add extra-cmake-modules.
2018-06-15gnu: fcitx: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
2018-06-15gnu: perl-xml-xpath: Update to 1.42.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
2018-06-15gnu: perl-xml-xpath: Propagate inputs.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this... [propagated-inputs]: ...to this.
2018-06-15gnu: perl-xml-atom: Propagate inputs.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to... [propagated-inputs]: ...this, and... [native-inputs]: ...remove duplicate packages from here.
2018-06-15gnu: nickle: Update to 2.81.Tobias Geerinckx-Rice
* gnu/packages/nickle.scm (nickle): Update to 2.81.
2018-06-15gnu: r-cubature: Update to 1.4.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-cubature): Update to 1.4.
2018-06-15gnu: neofetch: Update to 4.0.2.Rutger Helling
* gnu/packages/admin.scm (neofetch): Update to 4.0.2.
2018-06-15gnu: Add r-genomicinteractions.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
2018-06-15gnu: Add r-interactionset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
2018-06-15gnu: innoextract: Update to 1.7.Rutger Helling
* gnu/packages/compression.scm (innoextract): Update to 1.7.
2018-06-15gnu: Add r-riboseqr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
2018-06-15gnu: Add r-riboprofiling.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
2018-06-15gnu: Add r-chipcomp.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
2018-06-15gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New variable.
2018-06-15gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New variable.
2018-06-15gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked): New variable.
2018-06-15gnu: Add r-bayseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
2018-06-14gnu: certbot, python-acme: Update to 0.25.1.Leo Famulari
* gnu/packages/tls.scm (certbot): Update 0.25.1. (python-acme): Update to 0.25.1. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-requests-toolbelt.
2018-06-14gnu: Go 1.10: Update to 1.10.3.Leo Famulari
* gnu/packages/golang.scm (go-1.10): Update to 1.10.3.
2018-06-14gnu: Go 1.9: Update to 1.9.7.Leo Famulari
* gnu/packages/golang.scm (go-1.9): Update to 1.9.7.
2018-06-14linux-initrd: Module check correctly handles hyphen vs. underscore.Ludovic Courtès
Fixes <https://bugs.gnu.org/31714>. Reported by Vagrant Cascadian <vagrant@debian.org> and Florian Pelz <pelzflorian@pelzflorian.de>. * gnu/system/mapped-devices.scm (check-device-initrd-modules): Pass LINUX-MODULES through 'normalize-module-name'. * gnu/build/linux-modules.scm (normalize-module-name): Export.
2018-06-14gnu: emacs-racket-mode: Update and bug fix.Konrad Hinsen
* gnu/packages/emacs.scm (emacs-racket-mode): Update and bug fix. - Update to the current commit - Bug fix: include Racket files in addition to Emacs Lisp files Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14gnu: Add vowpal-wabbit.Fis Trivial
* gnu/packages/machine-learning.scm (vowpal-wabbit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14gnu: Add lightgbm.Fis Trivial
* gnu/packages/machine-learning.scm (lightgbm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14self: Add 'guix-daemon' to the result.Ludovic Courtès
* gnu/packages/package-management.scm (guix-daemon): New variable. * guix/self.scm (whole-package): Add #:daemon and honor it. (compiled-guix): Pass #:daemon to 'whole-package'.
2018-06-14gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}].Gábor Boskovits
* gnu/packages/tls.scm (libressl): Update to 2.7.4. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-06-14gnu: botan: Update to 2.6.0 [fixes CVE-2018-{9127,9860}].Leo Famulari
* gnu/packages/crypto.scm (botan): Update to 2.6.0.
2018-06-14gnu: vdirsyncer: Update to 0.6.6.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.6.6. [arguments]: Simplify the man-page building.
2018-06-14gnu: python-click-log: Update to 0.3.2.Leo Famulari
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
2018-06-14gnu: GnuPG 1.4: Update to 1.4.23.Leo Famulari
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.23. [source]: Remove patch. * gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-14gnu: python-freezegun: Update to 0.3.10.Tobias Geerinckx-Rice
* gnu/packages/check.scm (python-freezegun): Update to 0.3.10.
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