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2017-01-17gnu: Add r-vsn.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vsn): New variable.
2017-01-17gnu: Add r-affy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-affy): New variable.
2017-01-17gnu: Add r-affyio.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-affyio): New variable.
2017-01-17gnu: Add r-mzr.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
2017-01-17gnu: Add r-protgenerics.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
2017-01-17gnu: Add r-maldiquant.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
2017-01-17gnu: Add r-raremetals2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
2017-01-17gnu: Add r-seqminer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
2017-01-17gnu: Add r-compquadform.Ricardo Wurmus
* gnu/packages/statistics.scm (r-compquadform): New variable.
2017-01-17gnu: Add ribodiff.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ribodiff): New variable.
2017-01-17gnu: Add hisat2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat2): New variable.
2017-01-17gnu: Add r-fivethirtyeight.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
2017-01-17gnu: powertabeditor: Update to 2.0.0-alpha9.Ricardo Wurmus
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9. [source]: Simplify snippet. [arguments]: Adjust phases; remove unnecessary configure flag.
2017-01-17Revert "gnu: cups-filters: Disable mutool integration."Leo Famulari
This change would cause 594 packages to be rebuilt, so it was moved to the staging branch. This reverts commit 58a7bbc5fe52f20910fb0fe7fddb9012f2049034.
2017-01-17gnu: webkitgtk: Update to 2.14.3 [security fixes].Leo Famulari
Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}. * gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
2017-01-17gnu: cups-filters: Disable mutool integration.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’ to #:configure-flags. [inputs]: Remove mupdf.
2017-01-17gnu: libpsl: Update to 0.17.0.Tobias Geerinckx-Rice
* gnu/packages/web.scm (libpsl): Update to 0.17.0.
2017-01-17gnu: proxychains-ng: Update to 4.12.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
2017-01-17gnu: password-store: Install bash completions.Marius Bakke
* gnu/packages/password-utils.scm (password-store)[arguments]: Add 'install-shell-completions' phase.
2017-01-17gnu: gnucash: Update to 2.6.15.Ricardo Wurmus
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
2017-01-17gnu: Add proj.4.Björn Höfling
* gnu/packages/geo.scm (proj.4): New variable. (gnome-maps): Use license: prefix. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-17gnu: xscreensaver: Update to 5.36.Marius Bakke
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
2017-01-17gnu: perl-image-exiftool: Update to 10.40.Leo Famulari
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40. [synopsis, description]: Mention more capabilities.
2017-01-17gnu: ghc-quickcheck-instances: Update to 0.3.12.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12. [inputs]: Add ghc-scientific and ghc-vector.
2017-01-16gnu: imagemagick: Update to 6.9.7-4 [security fixes].Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
2017-01-16gnu: Add scrypt.Leo Famulari
* gnu/packages/crypto.scm (scrypt): New variable.
2017-01-16gnu: Add emacs-stripe-buffer.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
2017-01-16gnu: Add emacs-git-timemachine.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
2017-01-16gnu: guile-sqlite3: Provide a new source URL.Ludovic Courtès
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
2017-01-16file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.Ludovic Courtès
Suggested by John Darrington <john@darrington.wattle.id.au>. * gnu/system/file-systems.scm (%not-slash): New variable. (file-prefix?): New procedure. (file-system-needed-for-boot?): Use it to check whether FS holds the store. * tests/file-systems.scm ("file-system-needed-for-boot?"): New test. * gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove 'needed-for-boot?' field for "/gnu".
2017-01-16gnu: Add r-centipede.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
2017-01-16gnu: Add ocaml-lwt.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt): New variable.
2017-01-16gnu: Add ocaml-ssl.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ssl): New variable.
2017-01-16gnu: Add ocaml-react.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-react): New variable.
2017-01-16gnu: Add ocaml-ppx-tools.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
2017-01-16gnu: Add ocaml-alcotest.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
2017-01-16gnu: Add ocaml-astring.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-astring): New variable.
2017-01-16gnu: Add ocaml-fmt.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-fmt): New variable.
2017-01-16gnu: camlzip: Install both modules.Julien Lepiller
* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip modules.
2017-01-16gnu: Add python-autopep8.Thomas Danckaert
* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16gnu: kdevelop: Set more paths in wrapper script.Thomas Danckaert
* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in wrap-executable: add "/share" output of kdevplatform and kcmutils to $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16gnu: kdevelop: Update to 5.0.3.Thomas Danckaert
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16gnu: linux-libre: Update to 4.9.4.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.4.
2017-01-16gnu: linux-libre@4.4: Update to 4.4.43.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
2017-01-16gnu: dwm: Add '.desktop' file.ng0
Fixes <https://bugs.gnu.org/25438>. * gnu/packages/suckless.scm (dwm)[arguments]: Add 'install-xsession' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16gnu: dwm: Use modify-phases.ng0
* gnu/packages/suckless.scm (dwm): Use modify-phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16services: Export 'service-extension' procedures.Christopher Baines
* gnu/services.scm: Export service-extension-target and service-extension-compute. This allows for greater extensiblity of services by enabling service extensions to be wrapped. For example, the parameters passed to the compute function can be modified, or the return value of the compute function can be modified. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16gnu: zathura-pdf-poppler: Update to 0.2.7.Marius Bakke
* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.7.
2017-01-16gnu: zathura-djvu: Update to 0.2.6.Marius Bakke
* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.6.
2017-01-16gnu: zathura-ps: Update to 0.2.4.Marius Bakke
* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.4.
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