Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
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* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
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* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
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* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
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* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
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* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
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* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
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* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
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* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
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* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
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* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
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* gnu/packages/statistics.scm (pspp): Update to 1.2.0.
[inputs]: Add spread-sheet-widget.
[native-inputs]: Add autoconf, python-2, and texinfo.
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* gnu/packages/gtk.scm (spread-sheet-widget): New public variable.
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* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git.
[arguments]: Add #T to the end of the install phase.
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* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1.
[arguments]: Adjust file patching.
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* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
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* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3.
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* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
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* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12.
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This is a follow-up to commit 239716fb0ba0a7cd81f9d59dcf5a2261b8efe4fa.
* gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify
phases of base package.
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* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git.
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This fixes <https://bugs.gnu.org/32184>.
* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
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* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
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* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
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* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2.
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* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (mash): Update to 2.1.
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* gnu/packages/bioinformatics.scm (mash)[source]: Fetch from git.
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* gnu/packages/benchmark.scm (fio): Update to 3.11.
[source]: Use bz2 compressed tarball.
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* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.3.
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* gnu/packages/bioinformatics.scm (kaiju)[source]: Fetch from git.
[arguments]: Remove redundant installation step.
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* gnu/packages/bioinformatics.scm (idr)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (java-htsjdk)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (hisat2)[source]: Use versioned URL.
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* gnu/packages/bioinformatics.scm (grit): Update to 2.0.5.
[arguments]: Simplify.
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* gnu/packages/bioinformatics.scm (grit)[source]: Fetch from git.
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* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
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