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2015-03-04Merge branch 'core-updates'.Ludovic Courtès
2015-03-04gnu: python2-pygtk: fix path to pygobject-codegen-2.0Ricardo Wurmus
* gnu/packages/gtk.scm (python2-pygtk)[arguments]: Add phase to patch the path to the pygobject-codegen-2.0 executable.
2015-03-04gnu: octave: Update to 3.8.2.宋文武
* gnu/packages/maths.scm (octave): Update to 3.8.2.
2015-03-04gnu: enlightenment: Add missing, but used module.Tomáš Čech
* gnu/packages/enlightenment.scm: Add missing, but used module.
2015-03-04gnu: rename module and add missing dependencyTomáš Čech
* gnu/packages/enlightenment.scm: Change module name to be consistent. * gnu/packages/enlightenment.scm: Add missing, but used module.
2015-03-04gnu: xterm: Update to 315.宋文武
* gnu/packages/xorg.scm (xterm): Update to 315.
2015-03-04gnu: flac: Update to 1.3.1.宋文武
* gnu/packages/xiph.scm (flac): Update to 1.3.1.
2015-03-04gnu: flac: Propagate libogg.宋文武
* gnu/packages/xiph.scm (flac): Move libogg to 'propagated-inputs'.
2015-03-04gnu: gtk-xfce-engine: Update to 2.10.1.宋文武
* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.1.
2015-03-03gnu: Add bash-completion.Ludovic Courtès
* gnu/packages/bash.scm (bash-completion): New variable.
2015-03-03gnu: git: Install the Bash completion script.Ludovic Courtès
* gnu/packages/version-control.scm (git)[arguments]: Add 'install-shell-completion' phase.
2015-03-03gnu: Add search path specifications for 'SSL_CERT_FILE' and 'GIT_SSL_CAINFO'.Ludovic Courtès
* gnu/packages/openssl.scm (openssl)[native-search-paths]: Add specification for 'SSL_CERT_FILE'. * gnu/packages/version-control.scm (git)[native-search-paths]: Add specification for 'GIT_SSL_CAINFO'.
2015-03-03gnu: nss-certs: Install only trusted CA certificates.Mark H Weaver
* gnu/packages/certs.scm (nss-certs): Only install certificates that include a non-empty "openssl-trust=" annotation.
2015-03-03system: Add /etc/ssl symlink; set needed variables in /etc/profile.Mark H Weaver
* gnu/build/activation.scm (activate-etc): Create /etc/ssl symlink. * gnu/system.scm (etc-directory): Set SSL_CERT_DIR, SSL_CERT_FILE, and GIT_SSL_CAINFO in /etc/profile. Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
2015-03-03Revert "system: Add 'x509-certificates' field, and populate /etc/ssl/certs."Mark H Weaver
This reverts commit e979e6dd523acaa2a089f1b8f44e34c1e5b7d32d.
2015-03-03Revert "system: Create a single-file certificate bundle in /etc/ssl/certs."Mark H Weaver
This reverts commit 993300f6ccfbc9cbe628978690fc98eb63365dbd.
2015-03-03gnu: Add rdesktop.Ludovic Courtès
* gnu/packages/rdesktop.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-03-03gnu: vlc: Update to 2.2.0Jason Self
* gnu/packages/video.scm (vlc): Update to version 2.2.0.
2015-03-03gnu: libvorbis: Update to 1.3.5Jason Self
* gnu/packages/xiph.scm (libvorbis): Update to version 1.3.5.
2015-03-03gnu: Add terminology.Tomáš Čech
* gnu/packages/enlightenment.scm (terminology): New variable.
2015-03-03gnu: Add emotion-generic-playersTomáš Čech
* gnu/packages/enlightenment.scm (emotion-generic-players): New variable.
2015-03-03gnu: Add evas-generic-loadersTomáš Čech
* gnu/packages/enlightenment.scm (evas-generic-loaders): New variable.
2015-03-03gnu: Add elementary.Tomáš Čech
* gnu/packages/enlightenment.scm (elementary): New variable.
2015-03-03gnu: Add efl.Tomáš Čech
* gnu/packages/enlightenment.scm: New file * gnu/packages/enlightenment.scm (efl): New variable. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-03-03gnu: Add snakemake.Ricardo Wurmus
* gnu/packages/python.scm (snakemake): New variable.
2015-03-02gnu: libuv: Update to 1.4.2.Mark H Weaver
* gnu/packages/libevent.scm (libuv): Update to 1.4.2. Update source URI. Add 'file-name' field to origin. Move 'autogen' phase after 'unpack'. Run "sh autogen.sh" instead of "./autogen.sh".
2015-03-02gnu: skribilo: Adapt to recently renamed 'guile-reader' variable.Mark H Weaver
This is a followup to commit d6d9f1f715a727e23412fc9339eb2c5358d5a6ce. * gnu/packages/skribilo.scm (skribilo)[propagated-inputs]: Change 'guile-reader/guile-2.0' --> 'guile-reader'.
2015-03-02gnu: Add girara.Paul van der Walt
* gnu/packages/gtk.scm (girara): Add variable.
2015-03-02gnu: check: Update version to 0.9.14Paul van der Walt
* gnu/packages/check.scm (check): Update to version 0.9.14.
2015-03-02gnu: mpd: Update to 0.19.9.Paul van der Walt
* gnu/packages/mpd.scm (mpd): Update version to 0.19.9. Add boost and icu4c.
2015-03-02gnu: Add ruby-hoe.David Thompson
* gnu/packages/ruby.scm (ruby-hoe): New variable.
2015-03-02gnu: Add mpdscribble.David Thompson
* gnu/packages/mpd.scm (mpdscribble): New variable.
2015-03-02gnu: tcsh: Use ISO-8859-1 when patching "tests/testsuite".Ludovic Courtès
* gnu/packages/tcsh.scm (tcsh)[arguments]: Set %DEFAULT-PORT-ENCODING before substituting "tests/testsuite". Fixes build failure at <http://hydra.gnu.org/build/266962/nixlog/1/raw>.
2015-03-02system: Create a single-file certificate bundle in /etc/ssl/certs.Ludovic Courtès
Suggested by Mark H Weaver <mhw@netris.org>. * gnu/system.scm (certificate-bundle): New procedure. (etc-directory): Use it. [profile]: Set 'SSL_CERT_DIR', 'SSL_CERT_FILE', and 'GIT_SSL_CAINFO'.
2015-03-02system: Add 'x509-certificates' field, and populate /etc/ssl/certs.Ludovic Courtès
* gnu/system.scm (<operating-system>)[x509-certificates]: New field. (etc-directory): Add #:x509-certificates parameter and honor it. (operating-system-etc-directory): Pass #:x509-certificates in 'etc-directory' call. * doc/guix.texi (operating-system Reference): Document 'x509-certificates'.
2015-03-02gnu: Remove 'guile-reader-for-guile_1.8'.Ludovic Courtès
This was a useful example back in July 2012, but not very useful beyond that. * gnu/packages/guile.scm (guile-reader): Turn into a plain package. [source]: Use mirror:// URI. [inputs]: Use GUILE-2.0. [arguments]: Use the site/2.0 directory for --with-moduledir. (guile-reader/guile-1.8, guile-reader/guile-2.0): Remove.
2015-03-02services: xorg: Fix file descriptor leak from SLiM/xinitrc.Ludovic Courtès
This reverts commit 9515b745547cff08ad5b958bc54323dab19f29b9. * gnu/services/xorg.scm (xinitrc)[builder](close-all-fdes): Start from file descriptor 3.
2015-03-02gnu: Add llvm-3.6.0 and clang-3.6.0.Mark H Weaver
* gnu/packages/llvm.scm (llvm): Update to 3.6.0. (clang-from-llvm): New procedure. (clang): Update to 3.6.0. Reimplement using 'clang-from-llvm'. (llvm-3.5, clang-3.5): New variables.
2015-03-02gnu: Add crossmap.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (crossmap): New variable. * gnu/packages/patches/crossmap-allow-system-pysam.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-03-02gnu: gtk-xfce-engine: Update to 2.10.0.宋文武
* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.0.
2015-03-02gnu: Add CLIPper.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (clipper): New variable.
2015-03-02gnu: Add Scikit-learn.Ricardo Wurmus
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New variables.
2015-03-02gnu: xfconf: Re-enable tests.宋文武
* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases.
2015-03-02gnu: Add MACS.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs): New variable.
2015-03-02gnu: Add pybedtools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
2015-03-02gnu: Add pyyaml.Ricardo Wurmus
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
2015-03-02gnu: libotr: Update to 4.1.0.Mark H Weaver
* gnu/packages/messaging.scm (libotr): Update to 4.1.0.
2015-03-01Revert "services: xorg: Fix file descriptor leak from SLiM/xinitrc."Mark H Weaver
This reverts commit ec4a4c46efaf2e7373f331654640f1321c0f2e62, because it broke XFCE.
2015-03-01gnu: xfconf: Update to 4.12.0.Mark H Weaver
* gnu/packages/xfce.scm (xfconf): Update to 4.12.0. Disable tests.
2015-03-01gnu: gnu-pw-mgr: Update to 1.3.Mark H Weaver
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.3.