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2020-01-16gnu: caribou: Build with Python 3.Marius Bakke
* gnu/packages/gnome.scm (caribou)[native-inputs]: Change from PYTHON-2 to PYTHON. [inputs]: Change from PYTHON2-PYGOBJECT to PYTHON-PYGOBJECT.
2020-01-16gnu: libpeas: Update to 1.24.1.Marius Bakke
* gnu/packages/gnome.scm (libpeas): Update to 1.24.1. [build-system]: Change to MESON-BUILD-SYSTEM. [arguments]: New field. [native-inputs]: Remove INTLTOOL. ADD GETTEXT-MINIMAL and XORG-SERVER-FOR-TESTS.
2020-01-16gnu: ldb: Downgrade to 1.5.6.Marius Bakke
1.5.6 is actually newer and fixes problems with Python 3.8. * gnu/packages/samba.scm (ldb): Downgrade to 1.5.6.
2020-01-16gnu: python-importlib-metata: Delay python2 variant.Marius Bakke
This is a follow-up to commit 5efa04dd935ecf6f7803501b1b8952810f4330ad. * gnu/packages/python-xyz.scm (python-importlib-metadata)[properties]: New field.
2020-01-16gnu: python-packaging: Fix test failures on non-x86_64 architectures.Marius Bakke
* gnu/packages/patches/python-packaging-test-arch.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-packaging)[source](patches): New field.
2020-01-16gnu: kentutils: Build with OpenSSL 1.0.Marius Bakke
* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Change from OPENSSL to OPENSSL-1.0.
2020-01-16gnu: poetry: Remove redundant input.Marius Bakke
* gnu/packages/python-xyz.scm (poetry)[propagated-inputs]: Remove PYTHON-PATHLIB2.
2020-01-16gnu: python-zipp: Remove redundant inputs.Marius Bakke
The Python 3 variant do not need these. * gnu/packages/python-compression.scm (python-zipp)[native-inputs]: Remove PYTHON-CONTEXTLIB2, PYTHON-PATHLIB2, and PYTHON-UNITTEST2. [properties]: New field. (python2-zipp)[native-inputs]: Add PYTHON2-CONTEXTLIB2, PYTHON2-PATHLIB2, and PYTHON2-UNITTEST2.
2020-01-16gnu: rust-scopeguard-1.0: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scopeguard-1.0)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-scopeguard-0.3: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scopeguard-0.3)[arguments]: Skip build. [properties]: Don't inherit field.
2020-01-16gnu: rust-scoped-tls-1.0: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scoped-tls-1.0)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-scoped-tls-0.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scoped-tls-0.1)[arguments]: Skip build. [properties]: Don't inherit field.
2020-01-16gnu: rust-getopts-0.2: Update to 0.2.21.Efraim Flashner
* gnu/packages/crates-io.scm (rust-getopts-0.2): Update to 0.2.21. [arguments]: Add rust-unicode-width-0.1, rust-rustc-std-workspace-core-1.0, rust-rustc-std-workspace-std-1.0 to cargo-inputs.
2020-01-16gnu: rust-getopts-0.2: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-getopts-0.2)[arguments]: Skip build. Add rust-log-0.3 to cargo-development-inputs. [home-page]: Update home-page. [properties]: Remove field.
2020-01-16gnu: Add rust-rustc-std-workspace-std-1.0.Efraim Flashner
* gnu/packages/crates-io.scm (rust-rustc-std-workspace-std-1.0): New variable.
2020-01-16gnu: rust-futures-0.1: Update to 0.1.29.Efraim Flashner
* gnu/packages/crates-io.scm (rust-futures-0.1): Update to 0.1.29.
2020-01-16gnu: rust-futures-0.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-futures-0.1)[arguments]: Skip build. [home-page]: Update home-page. [properties]: Remove field.
2020-01-16gnu: rust-fuchsia-zircon-sys-0.3: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fuchsia-zircon-sys-0.3)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-fuchsia-zircon-0.3: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fuchsia-zircon-0.3)[arguments]: Skip build. Add rust-bitflags-1, rust-fuchsia-zircon-sys-0.3 to cargo-inputs. [properties]: Remove field.
2020-01-16gnu: rust-fuchsia-cprng-0.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fuchsia-cprng-0.1)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-fs-extra-1.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fs-extra-1.1)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-fnv-1.0: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fnv-1.0)[arguments]: Skip build. [synopsis]: Appease 'guix lint'. [properties]: Remove field.
2020-01-16gnu: rust-fixedbitset-0.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fixedbitset-0.1)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-findshlibs-0.5: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-findshlibs-0.5)[arguments]: Skip build. Add rust-lazy-static-1.3, rust-libc-0.2 to cargo-inputs. [properties]: Remove field.
2020-01-16gnu: rust-filetime-0.2: Update to 0.2.8.Efraim Flashner
* gnu/packages/crates-io.scm (rust-filetime-0.2): Update to 0.2.8. [arguments]: Remove rust-tempdir-0.3 from cargo-development-inputs. Add rust-tempfile-3.0.
2020-01-16gnu: rust-filetime-0.2: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-filetime-0.2)[arguments]: Skip build. Add rust-cfg-if-0.1, rust-libc-0.2, rust-redox-syscall-0.1, rust-winapi-0.3 to cargo-inputs. Add rust-tempdir-0.3 to cargo-development-inputs. [properties]: Remove field.
2020-01-16gnu: rust-fallible-iterator-0.2: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-fallible-iterator-0.2)[arguments]: Skip build. [properties]: Remove field.
2020-01-16gnu: rust-cmake-0.1: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-cmake-0.1)[arguments]: Skip build. Add rust-cc-1.0 to cargo-inputs. [properties]: Remove field.
2020-01-16gnu: rust-clicolors-control-1.0: Update to 1.0.1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-clicolors-control-1.0): Update to 1.0.1.
2020-01-16gnu: rust-clicolors-control-1.0: Don't hide package.Efraim Flashner
* gnu/packages/crates-io.scm (rust-clicolors-control-1.0)[arguments]: Skip build. Add rust-atty-0.2, rust-lazy-static-1.3, rust-libc-0.2, rust-winapi-0.3 to cargo-inputs. [properties]: Remove field.
2020-01-16gnu: guile-syntax-highlight: Add "guile3.0-syntax-highlight" variant.Ludovic Courtès
* gnu/packages/guile-xyz.scm (guile-syntax-highlight)[source]: Add 'snippet' and 'modules'. (guile3.0-syntax-highlight): New field.
2020-01-16gnu: guile-picture-language: Add "guile3.0-picture-language" variant.Ludovic Courtès
* gnu/packages/guile-xyz.scm (guile3.0-picture-language): New variable.
2020-01-16gnu: guile: Add 3.0.0.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0): New variable. (guile-next): Turn into an alias for GUILE-3.0.
2020-01-16gnu: Update copyright header.Nicolas Goaziou
* gnu/packages/python-xyz.scm: Update copyright header.
2020-01-16gnu: neomutt: Update to 20191207.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (neomutt): Update to 20191207.
2020-01-16gnu: lmdb: Update to 0.9.24.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (lmdb): Update to 0.9.24.
2020-01-16gnu: asymptote: Fix GUI.Nicolas Goaziou
Fixes bug#39147. * gnu/packages/plotutils.scm (asymptote)[inputs]: Add missing inputs. [arguments]: Wrap GUI executable "xasy".
2020-01-16gnu: Add python-cson.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-cson): New variable.
2020-01-16gnu: Add python-speg.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-speg): New variable.
2020-01-16gnu: cuirass: Update to 0.0.1-27.46f73b6.Christopher Baines
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-27.46f73b6.
2020-01-16gnu: r-variancepartition: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16gnu: r-flowworkspace: Update to 3.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16gnu: r-ropls: Update to 1.18.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16gnu: r-mlinterfaces: Update to 1.66.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2. [propagated-inputs]: Remove r-rda.
2020-01-16gnu: r-clusterprofiler: Update to 3.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16gnu: r-inspect: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16gnu: r-regioner: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16gnu: r-affycoretools: Update to 1.58.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4. [propagated-inputs]: Add r-glimma.
2020-01-16gnu: r-delayedarray: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.2.
2020-01-16gnu: r-iranges: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.2.
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