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2018-06-03Merge branch 'master' into core-updatesMark H Weaver
2018-06-03gnu: rust: Fix build for armhf and mips64el.Mark H Weaver
This is a followup to commit 514026d7de36b299238aff9dfcc2f898fb04072a. * gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable. (rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust' instead of 'nix-system->gnu-triplet'.
2018-06-02gnu: xxd: Remove all inherited inputs.Efraim Flashner
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02gnu: vim: Update to 8.1.0026.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.1.0026. [arguments]: Update substitute list on custom 'patch-config-files phase. [inputs]: Remove inetutils.
2018-06-02gnu: xxd: Return true from all phases.Efraim Flashner
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir phase.
2018-06-02gnu: Add emacs-fish-completion.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-fish-completion): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-org.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-multiedit.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-mu4e.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-magit.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-magit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-ediff.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: guile-json: Update to 1.0.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-json): Update to 1.0.1. [source]: Switch to github.com. Adjust 'snippet' to modify 'configure.ac' and 'Makefile.am'. [native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-02gnu: r-scater: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0. [propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove r-matrixstats and r-biomart.
2018-06-02gnu: r-mvtnorm: Update to 1.0-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02gnu: r-rgraphviz: Update to 2.24.0.Ricardo Wurmus
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02gnu: r-scran: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2. [propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02gnu: r-delayedmatrixstats: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02gnu: r-singlecellexperiment: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02gnu: r-beachmat: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1. [inputs]: Add zlib.
2018-06-02gnu: r-rhdf5lib: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1. [arguments]: Adjust substitutions.
2018-06-02gnu: r-hdf5array: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02gnu: r-qvalue: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02gnu: r-hitc: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02gnu: r-fithic: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02gnu: r-sushi: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02gnu: r-gwascat: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02gnu: r-gviz: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02gnu: r-gqtlstats: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0. [propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02gnu: r-ldblock: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0. [propagated-inputs]: Add r-biocgenerics.
2018-06-02gnu: r-erma: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0. [propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and r-iranges.
2018-06-02gnu: r-snpstats: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02gnu: r-gqtlbase: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02gnu: r-ggbio: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02gnu: r-biovizbase: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02gnu: r-organismdbi: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02gnu: r-ensembldb: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1. [propagated-inputs]: Remove r-annotationhub.
2018-06-02gnu: r-dirichletmultinomial: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02gnu: r-complexheatmap: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02gnu: r-genomicfiles: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02gnu: r-gage: Update to 2.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02gnu: r-keggrest: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02gnu: r-fastseg: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02gnu: r-annotationhub: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02gnu: r-interactivedisplaybase: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02gnu: r-edaseq: Update to 2.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02gnu: r-deseq: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02gnu: r-aroma-light: Update to 3.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02gnu: r-msnid: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02gnu: r-msnbase: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1. [propagated-inputs]: Add r-mass and r-scales.
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