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2019-11-16Merge remote-tracking branch master into core-updatesMathieu Othacehe
2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."Ludovic Courtès
This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux.
2019-11-15gnu: openmpi: Fix typo.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2.
2019-11-15gnu: tomb: Use system's sudo.Eric Bavier
* gnu/packages/crypto.scm (tomb)[arguments]: Disallow references to the "sudo" input. Remove it's path from the wrapper.
2019-11-15gnu: tomb: Add lsof input for "ps" and "slam".Eric Bavier
* gnu/packages/crypto.scm (tomb)[inputs]: Add lsof. [arguments]: Add it to the wrapper PATH.
2019-11-15gnu: tomb: Update to 2.7.Eric Bavier
* gnu/packages/patches/tomb-fix-errors-on-open.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/crypto.scm (tomb): Update to 2.7. [source]: Use the patch.
2019-11-15gnu: CMake: Add version 3.15.5.Ivan Vilata-i-Balaguer
Add CMake version 3.15.5 but do not replace the existing version to avoid triggering the rebuild of all CMake-based packages. See <https://issues.guix.gnu.org/issue/38060>. * gnu/packages/cmake.scm (cmake-3.15.5): Add CMake 3.15.5. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-15gnu: ungoogled-chromium: Update to 78.0.3904.97-0.acaf163.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for Chromium 78. (%chromium-version): Set to 78.0.3904.97. (%ungoogled-revision): Set to acaf16383f264d8a2f24142ad054c9b4355771d3. (%debian-revision): Set to e43d74632091324774a5049668782dba7b09cf72. (%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes. (gentoo-patches, %auxiliary-patches): Remove variables. (ungoogled-chromium-source): Adjust Debian patches for 78. Don't apply %AUXILIARY-PATCHES. (libvpx/chromium): New variable. (ungoogled-chromium)[arguments]: Add substitution for ICU headers. Adjust other substitutions for 78. Remove obsolete workaround. Increase ulimit in 'build' phase. Don't install '22x22' icon, which no longer exists. [inputs]: Change from LIBVPX to LIBVPX/CHROMIUM. [properties]: Remove HIDDEN?. (ungoogled-chromium-wayland)[inputs]: Don't remove inherited inputs. (ungoogled-chromium-is-deprecated, ungoogled-chromium-wayland-is-deprecated): Remove variables.
2019-11-15gnu: gn: Enable tests.Marius Bakke
* gnu/packages/build-tools.scm (gn)[arguments]: Remove #:tests?. Override 'check' phase.
2019-11-15gnu: gn: Update to 0.0-1666.6e5ba2e.Marius Bakke
* gnu/packages/build-tools.scm (gn): Update to 0.0-1666.6e5ba2e. [arguments]: Do not override LDFLAGS.
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès
This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15gnu: psm: Add "debug" output.Ludovic Courtès
* gnu/packages/linux.scm (psm)[outputs]: New field.
2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15gnu: hwloc: Update to 2.1.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15gnu: slurm: Build shared libraries only.Ludovic Courtès
* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
2019-11-15gnu: slurm: Update to 19.05.3-2.Ludovic Courtès
* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2. [source](snippet): Keep "contribs/mpi" and its reference in 'Makefile.am'. [inputs]: Remove OPENSSL. [arguments]: Remove "--with-ssl". Add 'install-libpmi' phase.
2019-11-15gnu: Add Intel MPI Benchmarks.Ludovic Courtès
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15gnu: rdma-core: Update to 26.0.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core): Update to 26.0. [arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags. [native-inputs]: Add PYTHON-DOCUTILS.
2019-11-15gnu: rdma-core: Use the "write" ioctl mode.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write" to #:configure-flags.
2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2".
2019-11-15gnu: ucx: Do not install static libraries.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx)[arguments]: Pass "--disable-static".
2019-11-15gnu: ucx: Enable InfiniBand support through Verbs.Ludovic Courtès
Until now, InfiniBand support was missing, as reported by "ucx_info -d" on a machine with InfiniBand networking. * gnu/packages/fabric-management.scm (ucx)[arguments]: Build with "--with-verbs".
2019-11-15system: vm: Support cross-compilation.Mathieu Othacehe
* gnu/system.scm (system-linux-image-file-name): Add support for cross-built systems. Remove system argument that was ignored, (operating-system-kernel-file): adapt by removing ignored os argument. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Add target argument and turn inputs into native-inputs. Pass target to qemu-command and gexp->derivation calls. (iso9660-image): Add target argument and pass it to expression->derivation-in-linux-vm. Remove qemu from inputs as it is not necessary. (qemu-image): Add target argument, also remove qemu from inputs. Pass target argument to expression->derivation-in-linux-vm call.
2019-11-15system: vm: Add arm64 support.Mathieu Othacehe
* gnu/build/vm.scm (load-in-linux-vm): Add target-arm64? argument and use it to pass correct arguments to qemu. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass the new target-arm64? argument added above. Do not add ESP partition on all ARM targets. Do not pass grub-efi package to initialize-hard-disk on ARM targets.
2019-11-15build: vm: Fix arm32 support.Mathieu Othacehe
* gnu/build/vm.scm (load-in-linux-vm): Disable qemu highmem support on ARM32 systems.
2019-11-15gnu: cmake: Fix cross-compilation.Pierre-Moana Levesque
* gnu/packages/cmake.scm (cmake-minimal)[inputs]: Move all inputs to ... [native-inputs]: ... here, except for ncurses.
2019-11-15gnu: crda: Fix cross-compilationPierre-Moana Levesque
* gnu/packages/linux.scm (crda)[arguments]: Patch Makefile to use cross pkg-config when cross-compiling. Also search for wireless-regdb in both native-inputs and inputs. Set CC variable to cross-compiler when cross-compiling.
2019-11-15gnu: libnl: Move python outputs to separate packages.Mathieu Othacehe
Cross compiling python extensions is currently broken. To allow libnl cross compilation, move its python2 and python3 outputs to separate packages. * gnu/packages/linux.scm (libnl)[outputs]: Remove python2 and python3 and replace by ... (libnl-python-package): ... this new procedure, (libnl-python2, libnl-python3): new variables.
2019-11-15gnu: guile-sqlite3: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-sqlite3)[source]: Apply previous patch, [native-inputs]: add guile.
2019-11-15gnu: guile-gcrypt: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/gnupg.scm (guile-gcrypt) [native-inputs]: Add guile, [arguments]: add libgcrypt-config to PATH when cross-compiling.
2019-11-15gnu: doxygen: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/documentation.scm (doxygen)[arguments]: Force cmake to use iconv.h from cross-libc.
2019-11-15gnu: git: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/version-control.scm (git-cross-configure-flags): New variable, (git)[arguments]: add it to configure-flags. Also add cross curl-config script to PATH. (git-minimal): Add previous variable to configure-flags.
2019-11-15gnu: swig: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/swig.scm (swig)[inputs]: Add pcre that is needed when cross-compiling.
2019-11-15gnu: openldap: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/openldap.scm (openldap)[inputs]: Move groff from here to ... [native-inputs]: ... here. Also add bdb and automake. [arguments]: Add cross-compilation specific configure-flags. Do not strip when cross-compiling. Add a new fix-configure phase to update outdated config.sub and config.guess. Add a fix-cross-gcc phase to set CC variable to cross-compiler name when cross-compiling.
2019-11-15gnu: bdb: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/dbm.scm (bdb-4.8)[arguments]: Pass host argument to configure when cross-compiling.
2019-11-15gnu: eudev: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (eudev)[arguments]: Look for xsltproc in both native-inputs and inputs. Also, do not run udevadm when cross-compiling. We need to find another way to generate hwdb.bin file for cross-built systems.
2019-11-15gnu: boost: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/patches/boost-dumpversion.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/boost.scm (boost)[source]: Apply it, [native-inputs]: add python unless cross-compiling, [arguments]: pass cross-compilation mandatory flags and fill a user-config.jam file pointing to cross-compiler. Disable python support that is broken when cross-compiling. Disable provide-libboost_python when cross-compiling.
2019-11-15gnu: icu4c: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/icu4c.scm (icu4c-build-root): New variable. (icu4c)[native-inputs]: Add it. [arguments]: Pass it as a configure-flag.
2019-11-15gnu: cyrus-sasl: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/patches/cyrus-sasl-ac-try-run-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cyrus-sasl.scm (cyrus-sasl)[origin]: Apply it. [native-tools]: Add autoconf, automake and libtool. [arguments]: Run autoconf to apply m4 modification in patch above.
2019-11-15gnu: groff: Fix cross compilation.Mathieu Othacehe
* gnu/packages/groff.scm (groff)[native-inputs]: Add self, [arguments]: set GROFF_BIN_PATH and GROFFBIN variables when cross-compiling. (groff-minimal)[native-inputs]: Add groff.
2019-11-15gnu: cmake: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/cmake.scm (cmake-minimal-cross): New package. * guix/build-system/cmake.scm (default-cmake): Add new target argument and use it to select cmake-minimal or cmake-minimal-cross. (lower): Pass target to default-cmake.
2019-11-15gnu: openssl: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/tls.scm (openssl-next)[arguments]: Pass CROSS_COMPILE environment variable and target system to configure script.
2019-11-15gnu: git-annex: Update to 7.20191114.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191114. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15gnu: rtmidi: Update to 4.0.0.Pierre Langlois
* gnu/packages/audio.scm (rtmidi): Update to 4.0.0. [source]: Download tarball from upstream URL rather than the powertab github fork. [arguments]: Enable tests. Remove 'build and 'install phases and add a new 'noconfigure phase to prevent the bootstrap script from invoking configure. [home-page]: Update homepage to upstream URL. * gnu/packages/music.scm (powertabeditor)[arguments]: Add phase that substitutes the rtmidi #include directive to find the header. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15gnu: freecad: Update to 0.18.4.John Soo
* gnu/packages/engineering.scm (freecad): Update to 0.18.4. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15gnu: emacs-flycheck-cpplint: Set cpplint path.Mathieu Othacehe
* gnu/packages/emacs-xyz.scm (emacs-flycheck-cpplint)[inputs]: Add cpplint. [arguments]: Add a set-cpplint-path phase to set the path of cpplint.
2019-11-15gnu: Add cpplint.Mathieu Othacehe
* gnu/packages/cpp.scm (cpplint): New variable.
2019-11-14gnu: aspell: Update to 0.60.8.Ludovic Courtès
* gnu/packages/aspell.scm (aspell): Update to 0.60.8. [source]: Remove "aspell-gcc-compat.patch". * gnu/packages/patches/aspell-gcc-compat.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-14gnu: aspell: Truly honor $ASPELL_DICT_DIR.Ludovic Courtès
Fixes <https://bugs.gnu.org/29686>. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * gnu/packages/aspell.scm (aspell)[arguments]: Remove 'wrap-aspell' phase. * gnu/packages/patches/aspell-default-dict-dir.patch: Add hunk to expand the right-hand size of '|' in values like "<$FOO|$BAR/baz>". Change DICT_DIR to refer to "$HOME" on the right-hand side.
2019-11-14gnu: fluidsynth: Update to 2.0.9.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.9.
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