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2017-02-01gnu: r-edger: Add r-statmod to inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger)[propagated-inputs]: Add r-statmod.
2017-02-01gnu: Add freeciv.Arun Isaac
* gnu/packages/games.scm (freeciv): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-01gnu: Add zpaq.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (zpaq): New variable.
2017-02-01download: url-fetch/tarball: Make ‘name’ truly optional.Tobias Geerinckx-Rice
* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if ‘name’ is #f, like the regular ‘url-fetch’ does. * gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’. * gnu/packages/engineering.scm (fastcap)[source]: Likewise. * gnu/packages/scheme.scm (scmutils)[source]: Likewise.
2017-02-01gnu: Add nyx.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (nyx): New variable.
2017-02-01gnu: tor: Use ‘license:’ prefix instead of #:select.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor, torsocks, privoxy, onionshare)[license]: Add prefix.
2017-02-01gnu: youtube-dl: Update to 2017.01.29.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.29.
2017-02-01gnu: python-stem: Update to 1.5.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-stem): Update to 1.5.4.
2017-02-01gnu: gstreamer: Update to 1.10.3.Marius Bakke
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.3. (gst-plugins-base): Likewise. (gst-plugins-good): Likewise. (gst-plugins-bad): Likewise. (gst-plugins-ugly): Likewise. (gst-libav): Likewise. (python-gst): Likewise.
2017-02-01gnu: xf86-video-intel: Update to 2.99.917-2-9fe04af.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-2-9fe04af.
2017-02-01gnu: fio: Enable optional helper scripts.Marius Bakke
* gnu/packages/benchmark.scm (fio)[arguments]: Add 'patch-paths' and 'wrap-python-scripts' phases. [inputs]: Add GNUPLOT, PYTHON-2, PYTHON2-NUMPY and PYTHON2-PANDAS.
2017-02-01gnu: fio: Update to 2.17.Marius Bakke
* gnu/packages/benchmark.scm (fio): Update to 2.17.
2017-02-01gnu: lftp: Update to 4.7.5.Marius Bakke
* gnu/packages/ftp.scm (lftp): Update to 4.7.5. [source]: Rearrange mirrors.
2017-02-01gnu: mumble: Update to 1.2.19.Marius Bakke
* gnu/packages/telephony.scm (mumble): Update to 1.2.19.
2017-02-01gnu: xapian: Update to 1.4.3.Marius Bakke
* gnu/packages/search.scm (xapian): Update to 1.4.3.
2017-02-01gnu: dtc: Update description to reference HOWTO.Danny Milosavljevic
* gnu/packages/u-boot.scm (dtc)[description]: Modify.
2017-02-01system: More 'file-append' instead of #~(string-append #$thing …).Ludovic Courtès
* gnu/system/shadow.scm (<user-account>)[shell]: Use 'file-append'. (%base-user-accounts): Likewise. * gnu/system/grub.scm (%background-image): Likewise.
2017-02-01system: Create home directories once 'file-systems' is up.Ludovic Courtès
Fixes <http://bugs.gnu.org/21108>. Reported by Andy Patterson <ajpatter@uwaterloo.ca> and Leo Famulari <leo@famulari.name>. * gnu/build/activation.scm (activate-users+groups)[activate-user]: Pass #:create-home? #t iff CREATE-HOME? and SYSTEM?. (activate-user-home): New procedure. * gnu/system/shadow.scm (account-shepherd-service): New procedure. (account-service-type)[extensions]: Add SHEPHERD-ROOT-SERVICE-TYPE extension. * gnu/tests/base.scm (run-basic-test)["home"] ["skeletons in home directories"]: New tests. * gnu/tests/install.scm (%separate-home-os, %separate-home-os-source) (%test-separate-home-os): New variables.
2017-02-01gnu: nginx: Update to 1.11.9.Leo Famulari
* gnu/packages/web.scm (nginx): Update to 1.11.9.
2017-01-31gnu: mg: Upgrade to 20161005.Eric Bavier
* gnu/packages/mg.scm (mg)[source]: Upgrade to 20161005. [native-inputs]: Add pkg-config. [inputs]: Add libbsd. [arguments]: Use modify-phases. Use #:make-flags rather than patching the Makefile. Install tutorial. [description]: Clarify relation to GNU Emacs.
2017-01-31gnu: Add JOE.Eric Bavier
* gnu/packages/text-editors.scm (joe): New variable.
2017-02-01gnu: libevent: Update to 2.1.8 [security fixes].Marius Bakke
* gnu/packages/libevent.scm (libevent): Update to 2.1.8. [inputs]: Change 'python-wrapper' to 'python-2'. Move 'which' to ... [native-inputs]: ... here. New field. (libevent-2.0): New variable. * gnu/packages/patches/libevent-2.1-dns-tests.patch, gnu/packages/patches/libevent-2.0-evdns-fix-remote-stack-overread.patch gnu/packages/patches/libevent-2.0-evdns-fix-searching-empty-hostnames.patch gnu/packages/patches/libevent-2.0-evutil-fix-buffer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[inputs]: Change 'libevent' to 'libevent-2.0'.
2017-01-31gnu: mdadm: Update to 4.0.Ludovic Courtès
* gnu/packages/linux.scm (mdadm): Update to 4.0. [arguments]: Add "CC=gcc" to #:make-flags.
2017-01-31gnu: parallel: Update to 20170122.Ludovic Courtès
* gnu/packages/parallel.scm (parallel): Update to 20170122.
2017-01-31gnu: kbd: Update to 2.0.4.Ludovic Courtès
* gnu/packages/linux.scm (kbd): Update to 2.0.4.
2017-01-31gnu: gdb: Update to 7.12.1.Ludovic Courtès
* gnu/packages/gdb.scm (gdb): Update to 7.12.1.
2017-01-31gnu: xcalc: Update to 1.0.6.Ludovic Courtès
* gnu/packages/xorg.scm (xcalc): Update to 1.0.6.
2017-01-31system: Introduce 'file-systems' Shepherd service.Ludovic Courtès
* gnu/services/base.scm (file-system-shepherd-services): New procedure. (file-system-service-type): Use it as the SHEPHERD-ROOT-SERVICE-TYPE extension. (user-processes-service-type): Change to take a single 'grace-delay' parameter. (user-processes-service): Remove 'file-systems' parameter. Pass GRACE-DELAY as the only value for the service. * gnu/system.scm (essential-services): Adjust accordingly.
2017-01-31file-systems: Do not read superblocks past the end of a device.Ludovic Courtès
Fixes <http://bugs.gnu.org/25573>. Reported by Alex Kost <alezost@gmail.com>. * gnu/build/file-systems.scm (seek*): New procedure. (read-superblock): Use it instead of 'seek' and ensure it returns OFFSET.
2017-01-31gnu: Add r-rhdf5.Raoul Jean Pierre Bonnal
2017-01-31gnu: Add r-tximport.Raoul Jean Pierre Bonnal
2017-01-31gnu: Add ocaml-bin-prot.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
2017-01-31gnu: Add ocaml-js-build-tools.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-js-build-tools): New variable.
2017-01-31gnu: Add ocaml-oasis.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-oasis): New variable.
2017-01-31gnu: Add ocaml-fileutils.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-fileutils): New variable.
2017-01-31gnu: Add ocaml-expect.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-expect): New variable.
2017-01-31gnu: Add ocaml-pcre.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-pcre): New variable.
2017-01-31gnu: Add ocaml-batteries.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-batteries): New variable.
2017-01-31gnu: Add omake.Julien Lepiller
* gnu/packages/ocaml.scm (omake): New variable. * gnu/packages/patches/omake-fix-non-determinism.patch: New file. * gnu/local.mk (dist_patch_DATA): New patch.
2017-01-31gnu: Add ocamlify.Julien Lepiller
* gnu/packages/ocaml.scm (ocamlify): New variable.
2017-01-31gnu: Add ocaml-base64.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-base64): New variable.
2017-01-31gnu: Add xinetd.Thomas Danckaert
* gnu/packages/web.scm (xinetd): New variable. * gnu/packages/patches/xinetd-CVE-2013-4342.patch, gnu/packages/patches/xinetd-fix-fd-leak.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-31gnu: Add neovim.Ricardo Wurmus
* gnu/packages/vim.scm (neovim): New variable.
2017-01-31gnu: Add lua5.2-lpeg.Ricardo Wurmus
* gnu/packages/lua.scm (lua5.2-lpeg): New variable.
2017-01-31gnu: Add lua5.2-bitop.Ricardo Wurmus
* gnu/packages/lua.scm (lua5.2-bitop): New variable.
2017-01-31gnu: Add lua5.2-libmpack.Ricardo Wurmus
* gnu/packages/serialization.scm (lua5.2-libmpack): New variable.
2017-01-31gnu: Add lua-libmpack.Ricardo Wurmus
* gnu/packages/serialization.scm (lua-libmpack): New variable.
2017-01-31gnu: Add libmpack.Ricardo Wurmus
* gnu/packages/serialization.scm (libmpack): New variable.
2017-01-31gnu: gmsh: Update to 2.16.0Paul Garlick
* gnu/packages/maths.scm (gmsh): Update to 2.16.0 Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-31gnu: bundler: Update to 1.14.3.Ben Woodcroft
* gnu/packages/ruby.scm (bundler): Update to 1.14.3.
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