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2022-04-12gnu: r-lmtest: Update to 0.9-40.Ricardo Wurmus
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-40.
2022-04-12gnu: r-restrserve: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-restrserve): Update to 1.0.0.
2022-04-12gnu: r-auc: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-auc): Update to 0.3.2.
2022-04-12gnu: r-rcppthread: Update to 2.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.3.
2022-04-12gnu: r-rcpp: Update to 1.0.8.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.8.3.
2022-04-12gnu: r-sass: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sass): Update to 0.4.1.
2022-04-12gnu: r-hwriter: Update to 1.3.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hwriter): Update to 1.3.2.1.
2022-04-12gnu: r-hmm: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hmm): Update to 1.0.1.
2022-04-12gnu: r-readxl: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-readxl): Update to 1.4.0. [propagated-inputs]: Remove r-rcpp; add r-cpp11. [native-inputs]: Add r-knitr.
2022-04-12gnu: r-mboost: Update to 2.9-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-mboost): Update to 2.9-6.
2022-04-12gnu: r-ggpmisc: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.6.
2022-04-12gnu: r-ggpp: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.4.
2022-04-12gnu: r-waldo: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-waldo): Update to 0.4.0.
2022-04-12gnu: r-datawizard: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.0.
2022-04-12gnu: r-abn: Update to 2.7-0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0. [propagated-inputs]: Add r-graph.
2022-04-12gnu: r-nmf: Update to 0.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
2022-04-12gnu: cl-py4cl: Improve package definition.Guillaume Le Vaillant
This is a follow-up to 917c25b3ba0575c6c6e44f8af0d1365bb2378220. * gnu/packages/lisp-xyz.scm (sbcl-py4cl)[propagated-inputs]: Move python to... [inputs]: ... here. [arguments]: Use 'search-input-file' instead of 'which' in 'fix-python3-path' phase.
2022-04-12gnu: cl-py4cl: Fix path to python3.Paul A. Patience
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Add the 'fix-python3-path' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-12gnu: cl-py4cl: Fix path to py4cl.py.Paul A. Patience
* gnu/packages/lisp-xyz.scm (sbcl-py4cl)[arguments]: Fix 'replace-*base-directory*-var' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-12gnu: trezor-agent: Fix it by deleting the sanity-check phase.Attila Lendvai
* gnu/packages/finance.scm (trezor-agent)[arguments]: Delete 'sanity-check' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-11gnu: genimage: Update to 15.Vagrant Cascadian
* gnu/packages/genimage.scm (genimage): Update to 15. [arguments]: Update 'fix-failing-tests phase to reference new files.
2022-04-11gnu: genext2fs: Update to 1.5.0.Vagrant Cascadian
* gnu/packages/linux.scm (genext2fs): Update to 1.5.0. [source] Update URL. [arguments] Remove 'apply-debian-patches phase. [home-page] Update URL.
2022-04-11gnu: Add r-copykat.zimoun
* gnu/packages/bioinformatics.scm (r-copykat): New variable.
2022-04-11gnu: Add r-dlm.zimoun
* gnu/packages/cran.scm (r-dlm): New variable.
2022-04-11gnu: Add r-paralleldist.zimoun
* gnu/packages/cran.scm (r-paralleldist): New variable.
2022-04-11gnu: openmpi: Remove trailing #t.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove trailing #t.
2022-04-11gnu: openmpi: Update to 4.1.3.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 4.1.3.
2022-04-11gnu: openmpi: Remove input labels.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Remove input labels.
2022-04-11gnu: hwloc: Remove trailing #t.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-1)[arguments]: Remove trailing #t. (hwloc-2)[arguments]: Likewise.
2022-04-11gnu: hwloc@1: Use 'target-arm32?' in conditional.Ludovic Courtès
Suggested by Maxime Devos. * gnu/packages/mpi.scm (hwloc-1)[inputs]: Use 'target-arm32?' rather than custom code.
2022-04-11gnu: hwloc: Remove input labels.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-1)[inputs]: Remove labels. (hwloc-2)[inputs]: Use 'modify-inputs'.
2022-04-11gnu: hwloc@1: Update to 1.11.13.Philippe SWARTVAGHER
* gnu/packages/patches/hwloc-1-test-btrfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mpi.scm (hwloc-1): Use it and update to 1.11.13. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2022-04-11gnu: Add r-tricycle.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-tricycle): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-11gnu: Add python-stopit.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-stopit): New variable.
2022-04-11gnu: Add python-yte.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-yte): New variable.
2022-04-11gnu: Add python-plac.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-plac): New variable.
2022-04-11gnu: Add python-parameterizedtestcase.Ricardo Wurmus
* gnu/packages/python-check.scm (python-parameterizedtestcase): New variable.
2022-04-11gnu: python-aws-xray-sdk: Update to 2.9.0.Ricardo Wurmus
* gnu/packages/python-web.scm (python-aws-xray-sdk): Update to 2.9.0. [arguments]: Delete two more test files; disable two tests.
2022-04-11gnu: python-django@2.2: Update to 2.2.28 [fixes CVE-2022-2834].Marius Bakke
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.28.
2022-04-11gnu: python-django@3.2: Update to 3.2.13 [fixes CVE-2022-2834].Marius Bakke
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.13.
2022-04-11gnu: python-django: Update to 4.0.4 [fixes CVE-2022-2834].Marius Bakke
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.4.
2022-04-11gnu: Add 'upstream-name' property to the netfilter libraries.Ludovic Courtès
This allows the 'generic-html' updater to find updates. * gnu/packages/linux.scm (libnetfilter-conntrack)[properties]: New field. (libnetfilter-cttimeout)[properties]: New field. (libnetfilter-cthelper)[properties]: New field. (libnetfilter-queue)[properties]: New field. (libnetfilter-acct)[properties]: New field. (libnetfilter-log)[properties]: New field.
2022-04-11gnu: Add ulogdfesoj000
* gnu/packages/linux.scm (ulogd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add libnetfilter-logfesoj000
* gnu/packages/linux.scm (libnetfilter-log): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add nfacctfesoj000
* gnu/packages/linux.scm (nfacct): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add libnetfilter-acctfesoj000
* gnu/packages/linux.scm (libnetfilter-acct): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add conntrack-toolsfesoj000
* gnu/packages/linux.scm (conntrack-tools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add libnetfilter-queuefesoj000
* gnu/packages/linux.scm (libnetfilter-queue): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add libnetfilter-cthelperfesoj000
* gnu/packages/linux.scm (libnetfilter-cthelper): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-11gnu: Add libnetfilter-cttimeoutfesoj000
* gnu/packages/linux.scm (libnetfilter-cttimeout): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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