summary refs log tree commit diff
path: root/gnu
AgeCommit message (Collapse)Author
2018-11-07gnu: r-multtest: Update to 2.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
2018-11-07gnu: r-qdnaseq: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
2018-11-07gnu: r-cghcall: Update to 2.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
2018-11-07gnu: r-cghbase: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
2018-11-07gnu: r-marray: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
2018-11-07gnu: r-diffbind: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
2018-11-07gnu: r-hpar: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
2018-11-07gnu: Add r-biocmanager.Ricardo Wurmus
* gnu/packages/cran.scm (r-biocmanager): New variable.
2018-11-07gnu: Add r-ncdf4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ncdf4): New variable.
2018-11-07gnu: Add r-rcppannoy.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppannoy): New variable.
2018-11-07gnu: slang: Use a correct location for terminfo dirs.Mathieu Othacehe
As termcap is disabled and no terminfo directory is given, slang is not able to query terminal capabilities. Specifying a correct path for terminfo will automatically disable termcap support in the configuration. * gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling termcap. [arguments]: Set MISC_TERMINFO_DIRS to a correct location.
2018-11-07gnu: terminals: Change libtsm and kmscon repositories.Mathieu Othacehe
Those two packages (from the same author) are no longer maintained and do not even compile. Switch to a fork that is maintained even if it does not have any release yet. * gnu/packages/terminals.scm (libtsm)[origin]: Use "https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method. (kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and switch to git-fetch method.
2018-11-07services: kmscon: Add an auto-login option.Mathieu Othacehe
Add an auto-login option that behaves as the one of mingetty-service. * gnu/services/base.scm (kmscon-configuration)[auto-login]: New field. (kmscon-service-type): Pass it to kmscon command. * doc/guix.texi (Base Services): Document it.
2018-11-07services: kmscon: Do not switch to vt at start.Mathieu Othacehe
* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon command.
2018-11-07gnu: Add guile-newt.Mathieu Othacehe
* gnu/packages/guile.scm (guile-newt): New variable.
2018-11-07gnu: kodi: Fix typo.Efraim Flashner
This is a follow-up to 2c17bd7b2955beef4130d11b33e07e4fb3b234dc. * gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
2018-11-06gnu: LibreOffice: Update to 6.1.3.2.Leo Famulari
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
2018-11-06gnu: GnuPG: Update to 2.2.11.Leo Famulari
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
2018-11-06install: Add 'install-database-and-gc-roots'.Ludovic Courtès
* gnu/build/install.scm (%root-profile): New variable. (install-database-and-gc-roots): New procedure. (populate-single-profile-directory): Replace inline code with a call to 'install-database-and-gc-roots'.
2018-11-06pack: Import (guix store database) only when '--localstatedir' is passed.Ludovic Courtès
This is another way to address <https://bugs.gnu.org/32184>, which was previously addressed in commit 19c924af4f3726688ca155a905ebf1cb9acdfca2. * gnu/build/install.scm (register-closure): Move to... * gnu/build/vm.scm (register-closure): ... here. New procedure. * guix/scripts/pack.scm (self-contained-tarball)[build]: Remove now unneeded 'with-extensions' form and custom (guix config) module. * tests/guix-pack.sh: Revert the strategy from commit 19c924af4f3726688ca155a905ebf1cb9acdfca2. * tests/pack.scm ("self-contained-tarball"): Likewise.
2018-11-06pack: Move store database creation to a separate derivation.Ludovic Courtès
* guix/scripts/pack.scm (store-database): New procedure. (self-contained-tarball): Use it when LOCALSTATEDIR? is true. Remove 'schema' and add 'database'. [build]: Pass DATABASE to 'populate-single-profile-directory'. (squashfs-image): Remove #:deduplicate? parameter. [build]: Remove (gnu build install) and (guix config) from the imported modules. Remove 'with-extensions'. * gnu/build/install.scm (populate-single-profile-directory): Remove #:deduplicate?, #:register?, and #:schema; add #:database. Remove call to 'register-closure' and simply copy DATABASE instead.
2018-11-06gnu: nginx: Update to 1.14.1 [security fixes].Marius Bakke
This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845. * gnu/packages/web.scm (nginx): Update to 1.14.1.
2018-11-06gnu: Syncthing: Update to 0.14.52.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
2018-11-06gnu: libgit2: Work around test failures on 32-bit platforms.Ludovic Courtès
* gnu/packages/patches/libgit2-oom-test.patch: New file. * gnu/packages/version-control.scm (libgit2)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06gnu: Add xcb-util-errors.Stefan Stefanović
* gnu/packages/xorg.scm (xcb-util-errors): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-06gnu: guile-sqlite3: Update home page.Ludovic Courtès
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
2018-11-06gnu: Add r-weights.lakshmi
* gnu/packages/cran.scm (r-weights): New variable. Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-11-06gnu: youtube-dl: Update to 2018.11.03.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
2018-11-06gnu: terraform-docs: Update to 0.5.0.Tobias Geerinckx-Rice
* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0. [native-inputs]: Remove them all.
2018-11-06gnu: jq: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/web.scm (jq)[source]: Code more hard.
2018-11-06gnu: jq: Update to 1.6.Tobias Geerinckx-Rice
* gnu/packages/web.scm (jq): Update to 1.6. [source]: Remove upstreamed patch. * gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06gnu: ffmpeg: Update to 4.1.Rutger Helling
* gnu/packages/video.scm (ffmpeg): Update to 4.1.
2018-11-06Revert "gnu: c-ares: Update to 1.15.0."Efraim Flashner
c-ares has more than 3000 dependant packages. This reverts commit b588adc96feec4498857ecb6d3537f746b0c0463.
2018-11-06gnu: c-ares: Update to 1.15.0.Efraim Flashner
* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
2018-11-06gnu: services: dns: Fix 'ddclient-activation'.Oleg Pykhalov
* gnu/services/dns.scm (ddclient-activation): Fix procedure.
2018-11-05gnu: xf86-video-intel: Update to commit ↵Marius Bakke
0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c. * gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
2018-11-05gnu: xapian: Update to 1.4.9.Marius Bakke
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/search.scm (xapian): Update to 1.4.9. [source](patches): Remove. (python-xapian-bindings): Update to 1.4.9.
2018-11-05gnu: libssh: Update to 0.7.7.Marius Bakke
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
2018-11-05gnu: strace: Update to 4.25.Marius Bakke
* gnu/packages/linux.scm (strace): Update to 4.25.
2018-11-05gnu: libmtp: Update to 1.1.16.Marius Bakke
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
2018-11-05gnu: libgit2: Update to 0.26.8.Marius Bakke
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
2018-11-05gnu: i3-wm: Update to 4.16.Marius Bakke
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
2018-11-05gnu: libgphoto2: Update to 2.5.20.Marius Bakke
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
2018-11-05gnu: glm: Update to 0.9.9.3.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
2018-11-05gnu: ffmpeg: Update to 4.0.3.Marius Bakke
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
2018-11-05gnu: ffmpeg@3.4: Update to 3.4.5.Marius Bakke
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
2018-11-05gnu: feh: Update to 2.28.1.Marius Bakke
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
2018-11-05gnu: libsoup: Update to 2.64.2.Marius Bakke
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
2018-11-05gnu: mono: Update home page.Marius Bakke
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
2018-11-05gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}].Leo Famulari
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.