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2020-08-16gnu: webkitgtk: Expose all font locations to the bubblewrap sandbox.Leo Prikler
Fixes <https://issues.guix.gnu.org/41174> and <https://issues.guix.gnu.org/42618>. The webkitgtk library relied on by Epiphany and others uses bubblewrap to sandbox its process. This sandbox was only exposing fonts relative to XDG_DATA_HOME. Extend it so that it honors font locations specified via XDG_DATA_DIRS as well, which is what Guix uses. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/webkit.scm (webkitgtk)[source]<patches>: Use it. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-08-16gnu: emacs-guix: Update to 0.5.2-58a840d067.Jan (janneke) Nieuwenhuizen
This fixes several missing autoloads (for Guile 3.0). * gnu/packages/emacs-xyz.scm (emacs-guix): Update to 0.5.2-58a840d067.
2020-08-16gnu: pigx-bsseq: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.2. [inputs]: Add r-ggrepel, bwa-meth, methyldackel, multiqc, and samblaster.
2020-08-16gnu: pigx-scrnaseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-bsseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-chipseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-rnaseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: r-loo: Use pandoc and pandoc-citeproc instead of the libraries.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo)[inputs]: Replace ghc-pandoc with pandoc, and ghc-pandoc-citeproc with pandoc-citeproc.
2020-08-16gnu: r-rstan: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan)[native-inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-rstantools: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstantools)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-stanheaders: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-rstanarm: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstanarm)[inputs]: Replace ghc-pandoc with pandoc and ghc-pandoc-citeproc with pandoc-citeproc.
2020-08-16gnu: r-nbconvertr: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-nbconvertr)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-abseqr: Add pandoc-citeproc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Add pandoc-citeproc.
2020-08-16gnu: r-abseqr: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-filematrix: Use pandoc-citeproc instead of ghc-pandoc-citeproc.Ricardo Wurmus
* gnu/packages/cran.scm (r-filematrix)[native-inputs]: Replace ghc-pandoc-citeproc with pandoc-citeproc.
2020-08-16gnu: r-bookdown: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown)[propagated-inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-rgl: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-bayesplot: Use pandoc instead of ghc-pandocRicardo Wurmus
* gnu/packages/cran.scm (r-bayesplot)[inputs]: Replace ghc-pandoc with pandoc.
2020-08-16gnu: r-rcas: Use pandoc instead of ghc-pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas)[propagated-inputs]: Replace ghc-pandoc with pandoc.
2020-08-16services: connman-shepherd-service: Don't use short flags.Efraim Flashner
* gnu/services/networking.scm (connman-shepherd-service): Use the long flag options for the start command.
2020-08-16gnu: ola: Build with protobuf@3.Tobias Geerinckx-Rice
* gnu/packages/lighting.scm (ola)[propagated-inputs]: Use default protobuf version.
2020-08-16gnu: ola: Build with libmicrohttpd 0.9.71.Tobias Geerinckx-Rice
* gnu/packages/lighting.scm (ola)[source]: Update to 0.10.7-0.5d88293. [source]: Use GIT-FETCH & GIT-FILE-NAME. Remove patch. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/ola-readdir-r.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-16gnu: Add kxstitch.Christopher Baines
* gnu/packages/kde-utils.scm (kxstitch): New variable.
2020-08-16services: docker: Add 'enable-iptables?' argument.Alexey Abramov
* gnu/services/docker.scm (docker-configuration): Define the argument. * gnu/services/docker.scm (docker-shepherd-service): Use it. * doc/guix.texi (Docker Service): Document it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add dbxfs.Efraim Flashner
* gnu/packages/file-systems.scm (dbxfs): New variable. * gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-08-16gnu: Add python-dropbox.Efraim Flashner
* gnu/packages/file-systems.scm (python-dropbox): New variable.
2020-08-16gnu: libmicrohttpd: Update to 0.9.71.Michael Rohleder
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.71. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add libde265.Vinicius Monego
* gnu/packages/video.scm (libde265): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add python-sgp4.Vinicius Monego
* gnu/packages/python-science.scm (python-sgp4): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add libinstpatch.Vinicius Monego
* gnu/packages/audio.scm (libinstpatch): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add veusz.Vinicius Monego
* gnu/packages/maths.scm (veusz): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: Add entangle.Vinicius Monego
* gnu/packages/photo.scm (entangle): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-16gnu: bitlbee-discord: Fix typo in description.Brendan Tildesley
* gnu/packages/messaging.scm (bitlbee-discord)[description]: Fix typo. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-08-16gnu: pspp: Update to 1.4.0.Efraim Flashner
* gnu/packages/statistics.scm (pspp): Update to 1.4.0.
2020-08-16gnu: spread-sheet-widget: Update to 0.6.Efraim Flashner
* gnu/packages/gtk.scm (spread-sheet-widget): Update to 0.6.0.
2020-08-16gnu: khard: Update to 0.17.0.Efraim Flashner
* gnu/packages/mail.scm (khard): Update to 0.17.0. [inputs]: Remove python-pyyaml.
2020-08-16gnu: vala@0.48: Update to 0.48.7.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (vala-0.48): Update to 0.48.7.
2020-08-16gnu: gnome-shell-extension-dash-to-panel: Update to 38.Tobias Geerinckx-Rice
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-dash-to-panel): Update to 38.
2020-08-16gnu: ltris: Update to 1.2.1.Tobias Geerinckx-Rice
* gnu/packages/games.scm (ltris): Update to 1.2.1.
2020-08-16gnu: gtkwave: Update to 3.3.106.Tobias Geerinckx-Rice
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.106.
2020-08-16gnu: gupnp: Update to 1.2.4.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (gupnp): Update to 1.2.4.
2020-08-16gnu: gssdp: Update to 1.2.3.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (gssdp): Update to 1.2.3.
2020-08-16gnu: lftp: Update to 4.9.2.Tobias Geerinckx-Rice
* gnu/packages/ftp.scm (lftp): Update to 4.9.2.
2020-08-16gnu: lmdb: Update to 0.9.26.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (lmdb): Update to 0.9.26.
2020-08-16gnu: python-stdnum: Update to 1.14.Tobias Geerinckx-Rice
* gnu/packages/finance.scm (python-stdnum): Update to 1.14.
2020-08-15gnu: go-github-com-muesli-reflow-wordwrap: Declare source file-name.Efraim Flashner
* gnu/packages/golang.scm (go-github-com-muesli-reflow-wordwrap) [source]: Declare a source file-name.
2020-08-15gnu: sparsehash: Update to 2.0.4.Tobias Geerinckx-Rice
* gnu/packages/datastructures.scm (sparsehash): Update to 2.0.4.
2020-08-15gnu: facter: Update to 4.0.34.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (facter): Update to 4.0.34.
2020-08-15gnu: gitolite: Update to 3.6.12.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (gitolite): Update to 3.6.12.
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