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2023-03-21tests: gdm: Remove tmpfs related tests.Bruno Victal
This test never managed to reveal the problem described in [1] because from gnu/system/vm.scm it is seen that our "/tmp" mount is filtered out and replaced with a "/tmp" file-system that is mounted with (needed-for-boot? #t). This last bit is crucial as the problem was caused by the user specified "/tmp" file-system lacking this part which caused "/tmp" being mounted after x11-socket-directory-service has run, effectively shadowing the directory. [1]: <https://issues.guix.gnu.org/57589> * gnu/tests/gdm.scm (%test-gdm-wayland-tmpfs): Delete variable. (make-os): Remove tmpfs? argument. (run-gdm-test): Remove tmpfs? argument. Add a small delay since waiting for gdm.pid is not enough, causing the tests to fail sporadically. Reviewed-by: Josselin Poiret <dev@jpoiret.xyz> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21services: Add x11-socket-directory-service-type.Bruno Victal
The x11-socket-directory-service misuses activation-service-type to create directories. This kind of usage is incorrect since activation-service-type does not depend on file-systems, hence incompatible with user defined /tmp mount. This commit turns x11-socket-directory-service into a shepherd one-shot service by defining a new x11-socket-directory-service-type. * gnu/services/desktop.scm (x11-socket-directory-service-type): New variable. (x11-socket-directory-service): Deprecate procedure. (desktop-services-for-system): Use new service-type. * gnu/tests/lightdm.scm: Ditto. Reviewed-by: Josselin Poiret <dev@jpoiret.xyz> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: manuskript: Add bash-minimal to inputs.Maxim Cournoyer
* gnu/packages/text-editors.scm (manuskript) [inputs]: Add bash-minimal.
2023-03-21gnu: manuskript: Update to 0.15.0.Nicolas Goaziou
* gnu/packages/text-editors.scm (manuskript): Update to 0.15.0. [inputs]: Add PYTHON-PYENCHANT. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21services: mcron: Add log-file and date-format fields.Bruno Victal
* doc/guix.texi (Scheduled Job Execution): Document it. * gnu/services/mcron.scm (mcron-configuration)[log-file, date-format]: New field. (mcron-shepherd-services): Add log-file and date-format support. Use file-append instead of string-append. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21services: mcron: Use match-record.Bruno Victal
* gnu/services/mcron.scm (mcron-shepherd-services): Use match-record. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21services: mcron: Restyle mcron-configuration.Bruno Victal
* doc/guix.texi (Scheduled Job Execution): Sync doc with source. * gnu/services/mcron.scm (mcron-configuration): Restyle. [log-format]: Fix incorrectly formatted text. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: diffoscope: Update to 239.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 239. [native-inputs]: Replace poppler-next with poppler. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: python-pypandoc: Upgrade to 1.7.5.Hugo Buddelmeijer
The tests of python-pypandoc 1.6.5 fail; these are fixed in 1.7.5: https://github.com/JessicaTegner/pypandoc/commit/6670e906dccaddcfcdec228e34e0eaffc20ae791 The tests of later versions of python-pypandoc also fail though: https://github.com/JessicaTegner/pypandoc/pull/327 Finally, python-pypandoc requires the pandoc data to be embeded in the binary: https://github.com/jgm/pandoc/blob/main/INSTALL.md#creating-a-relocatable-binary * gnu/packages/python-xyz.scm (python-pypandoc): Upgrade to 1.7.5 * gnu/packages/haskel-xyz.scm (pandoc): Embed data files. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: pocl: Update to 3.1Andy Tai
* gnu/packages/opencl.scm (pocl): Update to 3.1 [native-inputs]: Add python-3 [arguments]: Update RPATH. Skip failed tests on aarch64 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: ssh-to-age: Update to 1.1.2.Jack Hill
* gnu/packages/password-utils.scm (ssh-to-age): Update to 1.1.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: pass-age: Update to 1.7.4a1.Jack Hill
* gnu/packages/password-utils.scm (pass-age): Update to 1.7.4a1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: go-filippo-io-age: Update to 1.1.1.Jack Hill
* gnu/packages/golang.scm (go-filippo-io-age): Update to 1.1.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: Add dvisvgm.Thomas Albers
* gnu/packages/tex.scm (dvisvgm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: fnlfmt: Update to 0.3.0.Ludovic Courtès
* gnu/packages/lua.scm (fnlfmt): Update to 0.3.0.
2023-03-21gnu: fennel: Update to 1.3.0.Yovan Naumovski
* gnu/packages/lua.scm (fennel): Update to 1.3.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21gnu: vtk: Remove reference to GCC.Ludovic Courtès
This removes GCC from the closure of VTK, reducing its size by 200 MiB (17%). * gnu/packages/image-processing.scm (vtk)[arguments]: Change to gexps. Add #:phases. (vtk-7)[arguments]: Turn #:configure-flags into a gexp.
2023-03-21gnu: vtk: Enable OpenMP, TBB, and Open MPI support.Ludovic Courtès
* gnu/packages/image-processing.scm (vtk)[arguments]: Pass options to enable OpenMP, TBB, and MPI. [inputs]: Add OPENMPI. [propagated-inputs]: Add TBB.
2023-03-21gnu: gnulib: Depend on git-minimal/pinned.Josselin Poiret
* gnu/packages/build-tools.scm (gnulib)[native-inputs]: Change git to git-minimal/pinned. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-21services: static-networking: 'eval-when' for code used at expansion-time.Ludovic Courtès
Reported by bjc on #guix. * gnu/services/base.scm (valid-name, cidr->netmask): Wrap in 'eval-when' since they are used by "compile-time procedures" (macros).
2023-03-21gnu: fdroidcl: Update to 0.7.0.Sergey Trofimov
* gnu/packages/android.scm (fdroidcl): Update to 0.7.0. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: Add go-github-com-schollz-progressbar-v3.Sergey Trofimov
* gnu/packages/golang.scm (go-github-com-schollz-progressbar-v3): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: Add go-github-com-mitchellh-colorstring.Sergey Trofimov
* gnu/packages/golang.scm (go-github-com-mitchellh-colorstring): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: Add samplebrain.Antero Mejr
* gnu/packages/music.scm (samplebrain): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: guix-build-coordinator: Update to 0-74.804165f.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-74.804165f.
2023-03-21gnu: Update URLs of migrated repositories.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-bst, sbcl-cl-octet-streams, sbcl-lzlib, sbcl-simple-parallel-tasks, sbcl-cl-z85, sbcl-utm-ups, sbcl-mgrs, sbcl-maidenhead, sbcl-olc, sbcl-simple-neural-network, sbcl-zstd)[source, home-page]: Use codeberg URL instead of github one. * gnu/packages/radio.scm (convert-samples)[source, home-page]: Likewise.
2023-03-21services: configuration: simplify alist? procedure.Bruno Victal
* gnu/services/configuration.scm (alist?): simplify procedure. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: paulxstretch: Patch paths.Sughosha
* gnu/packages/music.scm (paulxstretch) [arguments]: Add patch-paths phase. [inputs]: Add dconf, fontconfig and glib:bin. Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-03-21gnu: Add python-brian2tools.Lars-Dominik Braun
* gnu/packages/machine-learning.scm (python-brian2tools): New variable.
2023-03-21gnu: Add python-libneuroml.Lars-Dominik Braun
* gnu/packages/python-science.scm (python-libneuroml): New variable.
2023-03-21gnu: Add python-pylems.Lars-Dominik Braun
* gnu/packages/python-science.scm (python-pylems): New variable.
2023-03-21gnu: Add python-markdown-strings.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-markdown-strings): New variable.
2023-03-21gnu: r-tibble: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.1.
2023-03-21gnu: r-keras: Update to 2.11.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-keras): Update to 2.11.1.
2023-03-21gnu: r-intervals: Update to 0.15.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-intervals): Update to 0.15.3.
2023-03-21gnu: r-maldiquant: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.1.
2023-03-21gnu: r-metafor: Update to 4.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-metafor): Update to 4.0-0. [propagated-inputs]: Add r-numderiv. [native-inputs]: Add r-r-rsp.
2023-03-21gnu: r-qgraph: Update to 1.9.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.4.
2023-03-21gnu: r-ggfortify: Update to 0.4.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.16.
2023-03-21gnu: r-sf: Update to 1.0-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 1.0-12.
2023-03-21gnu: r-glmmtmb: Update to 1.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.6.
2023-03-21gnu: r-fnn: Update to 1.1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.2.
2023-03-21gnu: r-truncnorm: Update to 1.0-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-9.
2023-03-21gnu: r-partykit: Update to 1.2-19.Ricardo Wurmus
* gnu/packages/cran.scm (r-partykit): Update to 1.2-19.
2023-03-21gnu: r-nmf: Update to 0.26.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
2023-03-21gnu: sbcl-history-tree: Update to 0.1.1.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-history-tree): Update to 0.1.1.
2023-03-21gnu: r-singlecellexperiment: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1.
2023-03-21gnu: r-variancepartition: Update to 1.28.9.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9.
2023-03-21gnu: r-biocparallel: Update to 1.32.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6.
2023-03-20gnu: Add mygnuhealth.Petr Hodina
* gnu/packages/medical.scm (mygnuhealth): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Co-authored-by: Morgan Smith <Morgan.J.Smith@outlook.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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