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2020-11-17Merge remote-tracking branch 'origin/version-1.2.0' into masterMaxim Cournoyer
Conflicts: gnu/packages/bioinformatics.scm The python-pysam package fixed in master was kept instead of the update done in the version-1.2.0 branch.
2020-11-17gnu: snap: Update to 6.3.3.Nicolas Goaziou
* gnu/packages/education.scm (snap): Update to 6.3.3.
2020-11-17gnu: units: Update to 2.21.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (units): Update to 2.21.
2020-11-17gnu: python-parted: Update to 3.11.7.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (python-parted): Update to 3.11.7.
2020-11-17gnu: oath-toolkit: Update to 2.6.4.Tobias Geerinckx-Rice
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.4.
2020-11-17gnu: nnn: Update to 3.5.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (nnn): Update to 3.5.
2020-11-17system: vm: Remove unused system-disk-image-in-vm.Maxim Cournoyer
* gnu/system/vm.scm (system-disk-image-in-vm): Remove. Reported-by: Ludovic Courtès <ludo@gnu.org>
2020-11-17bootloader: grub: Skip install-grub-efi when producing a disk image.Maxim Cournoyer
Fixes <http://issues.guix.gnu.org/44353>. Every bootloader should try their best to install themselves using only the MOUNT-POINT and otherwise do nothing. This requirement comes from the necessity to call INSTALL-GRUB when installing the (non-EFI) GRUB bootloader, which needs to populate the root file system with extra modules that cannot be fit in the core.img file, limited in size to 491520 bytes (by the i386-pc format required for legacy BIOS compatibility). As introducing bootloader knowledge at the level of the image code is undesirable, every bootloader should be adapted to support this fall-back for their installation procedure (TODO). * gnu/bootloader/grub.scm (install-grub-efi)[efi-dir]: Skip when the EFI-DIR argument is set to #f.
2020-11-17image: Remove conflicting user-provided EFI file system.Maxim Cournoyer
When the image type is "raw" or derived from it (such as "qcow2"), an ESP partition and file system is already added by the image generator. If a conflicting user-provided EFI file system is provided, it causes the boot to fail, as happens for the lightweight-desktop.tmpl and desktop.tmpl templates under gnu/system/examples. * gnu/system/image.scm (operating-system-for-image): Remove file systems whose mount point is "/boot/efi".
2020-11-17gnu: Add astroid.Tanguy Le Carrour
* gnu/packages/mail.scm (astroid): New variable. Co-authored with Efraim Flashner <efraim@flashner.co.il>. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-11-17gnu: gmime: Enable introspection.Tanguy Le Carrour
* gnu/packages/mail.scm (gmime)[arguments]: Add the "--enable-introspection" flag to configure-flags. [native-inputs]: Add gobject-introspection. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-11-17gnu: libhandy: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libhandy): Update to 1.0.2.
2020-11-17gnu: libhandy: Update home page.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libhandy)[home-page]: Update.
2020-11-17gnu: arc-theme: Add missing configure flag.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (arc-theme)[arguments]: Add ‘--disable-cinnamon’ to #:configure-flags.
2020-11-17gnu: node@10.22: Update to 10.22.1.Jonathan Brielmaier
* gnu/packages/node.scm (node-10.22): Update to 10.22.1.
2020-11-17installer: Fix device synchronization.Mathieu Othacehe
Reported by Florian Pelz: https://lists.gnu.org/archive/html/guix-devel/2020-11/msg00326.html. * gnu/installer/utils.scm (call-with-time): New procedure, (let/time): new macro. * gnu/installer/parted.scm (with-delay-device-in-use?): Increase the retry count to 16. (non-install-devices): Remove the call to with-delay-device-in-use? as it doesn't return the expected result, and would block much longer now. (free-parted): Log the time required to sync each device.
2020-11-17installer: Fix device synchronization.Mathieu Othacehe
Reported by Florian Pelz: https://lists.gnu.org/archive/html/guix-devel/2020-11/msg00326.html. * gnu/installer/utils.scm (call-with-time): New procedure, (let/time): new macro. * gnu/installer/parted.scm (with-delay-device-in-use?): Increase the retry count to 16. (non-install-devices): Remove the call to with-delay-device-in-use? as it doesn't return the expected result, and would block much longer now. (free-parted): Log the time required to sync each device.
2020-11-17gnu: tomb: Update to 2.8.Eric Bavier
Fixes CVE-2020-28638. * gnu/packages/crypto.scm (tomb): Update to 2.8 [source]: Remove obsolete patch. * gnu/packages/patches/tomb-fix-errors-on-open.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-17gnu: bootloader: efi-bootloader-chain: Allow multiple HOOKS.Stefan
* gnu/bootloader.scm (efi-bootloader-profile): Allow multiple HOOKS. (efi-bootloader-chain): Allow multiple HOOKS. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-11-17gnu: emacs-helm: Update to 3.7.0.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.7.0.
2020-11-17gnu: emacs-djvu: Update to 1.1.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-djvu): Update to 1.1.1.
2020-11-17gnu: enet: Update to 1.3.17.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (enet): Update to 1.3.17.
2020-11-17gnu: mpop: Update to 1.4.11.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (mpop): Update to 1.4.11.
2020-11-17gnu: livemedia-utils: Cross-compile.Tobias Geerinckx-Rice
* gnu/packages/video.scm (livemedia-utils)[arguments]: Use CC-FOR-TARGET and CXX-FOR-TARGET.
2020-11-17gnu: livemedia-utils: Update to 2020.11.05.Tobias Geerinckx-Rice
* gnu/packages/video.scm (livemedia-utils): Update to 2020.11.05. [inputs]: Add openssl.
2020-11-17gnu: wireguard-linux-compat: Update to 1.0.20201112.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (wireguard-linux-compat): Update to 1.0.20201112. [arguments]: Build with linux-libre-5.4.
2020-11-17gnu: arc-theme: Update to 20201013.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (arc-theme): Update to 20201013. [source]: Use new upstream.
2020-11-17gnu: python-pypika: Update to 0.44.0.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pypika): Update to 0.44.0.
2020-11-17gnu: python-peewee: Update to 3.14.0.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-peewee): Update to 3.14.0.
2020-11-17gnu: xsimd: Define SIMD.Tobias Geerinckx-Rice
* gnu/packages/cpp.scm (xsimd)[description]: Expand the @acronym.
2020-11-17gnu: xsimd: Update to 7.4.9.Tobias Geerinckx-Rice
* gnu/packages/cpp.scm (xsimd): Update to 7.4.9.
2020-11-17gnu: gnu-pw-mgr: Update to 2.7.4.Tobias Geerinckx-Rice
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.7.4.
2020-11-17gnu: youtube-dl: Update to 2020.11.17.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2020.11.17.
2020-11-17gnu: pdfpc: Update to 4.4.1.Tobias Geerinckx-Rice
* gnu/packages/pdf.scm (pdfpc): Update to 4.4.1.
2020-11-16gnu: guix: Use libexec/guix/guile in the 'guix' shebang.Ludovic Courtès
This is a followup to 880fe019ae64df37815bbdb1a22305f99dae759d. * gnu/packages/package-management.scm (guix)[arguments]: Delete 'patch-shebangs' phase.
2020-11-16gnu: z3: Update to 4.8.9.Martin Becze
* gnu/packages/maths.scm (z3): Update to 4.8.9. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-16gnu: git: Add phase to restore hooks shebang.Miguel Ángel Arruga Vivas
Fixes <https://bugs.gnu.org/25508>. * gnu/packages/version-control.scm (git)[arguments]: New phase restore-sample-hooks-shebang.
2020-11-16gnu: grub: Cross-compile for mips64el-linux.Efraim Flashner
* gnu/packages/bootloaders.scm (grub)[arguments]: Add custom phase to set BUILD_FREETYPE_* flags. [native-inputs]: Add freetype.
2020-11-16gnu: grub: Don't run tests when cross compiling.Efraim Flashner
* gnu/packages/bootloaders.scm (grub)[arguments]: Skip tests when cross-compiling.
2020-11-16gnu: Add emacs-boon.AuPath
* gnu/packages/emacs-xyz.scm (emacs-boon): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-11-16gnu: Add emacs-modalka.AuPath
* gnu/packages/emacs-xyz.scm (emacs-modalka): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-11-16gnu: emacs-matrix-client: Update to 0.0.0-5.59c7924.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to 0.0.0-5.59c7924. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-11-16services: mingetty: Export configuration accessors.Marius Bakke
* gnu/services/base: Export configuration accessors for mingetty.
2020-11-16gnu: icedove: Update to 78.4.3.Jonathan Brielmaier
* gnu/packages/gnuzilla.scm (icedove): Update to 78.4.3.
2020-11-16gnu: gcc-vc4: Update to commit 0fe4b83897341742f9df65797474cb0feab4b377.Danny Milosavljevic
* gnu/packages/patches/gcc-6-fix-buffer-size.patch: New file. * gnu/packages/patches/gcc-6-fix-isl-includes.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/embedded.scm (gcc-vc4): Update to commit 0fe4b83897341742f9df65797474cb0feab4b377. [source]: Add the patches from above.
2020-11-16gnu: pzstd: Cross compile.Efraim Flashner
* gnu/packages/compression.scm (pzstd)[arguments]: use cc-for-target, cxx-for-target in make-flags. [native-inputs]: Only use googletest when compiling natively. [inputs]: Add googletest when cross compiling.
2020-11-16gnu: zstd: Cross compile.Efraim Flashner
* gnu/packages/compression.scm (zstd)[arguments]: When targeting another system use cc-for-target in make-flags.
2020-11-16gnu: bsdiff: Cross compile.Efraim Flashner
* gnu/packages/compression.scm (bsdiff)[arguments]: Use cc-for-target in make-flags.
2020-11-16gnu: squashfs-tools: Cross compile.Efraim Flashner
* gnu/packages/compression.scm (squashfs-tools)[arguments]: Use cc-for-target in make-flags.
2020-11-16gnu: lz4: Cross compile.Efraim Flashner
* gnu/packages/compression.scm (lz4)[arguments]: When targeting another system use cc-for-target in make-flags.