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Conflicts:
gnu/packages/bioinformatics.scm
The python-pysam package fixed in master was kept instead of the update done
in the version-1.2.0 branch.
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* gnu/packages/education.scm (snap): Update to 6.3.3.
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* gnu/packages/maths.scm (units): Update to 2.21.
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* gnu/packages/disk.scm (python-parted): Update to 3.11.7.
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* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.4.
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* gnu/packages/admin.scm (nnn): Update to 3.5.
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* gnu/system/vm.scm (system-disk-image-in-vm): Remove.
Reported-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <http://issues.guix.gnu.org/44353>.
Every bootloader should try their best to install themselves using only the
MOUNT-POINT and otherwise do nothing. This requirement comes from the
necessity to call INSTALL-GRUB when installing the (non-EFI) GRUB bootloader,
which needs to populate the root file system with extra modules that cannot be
fit in the core.img file, limited in size to 491520 bytes (by the i386-pc
format required for legacy BIOS compatibility).
As introducing bootloader knowledge at the level of the image code is
undesirable, every bootloader should be adapted to support this fall-back for
their installation procedure (TODO).
* gnu/bootloader/grub.scm (install-grub-efi)[efi-dir]: Skip when the EFI-DIR
argument is set to #f.
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When the image type is "raw" or derived from it (such as "qcow2"), an ESP
partition and file system is already added by the image generator. If a
conflicting user-provided EFI file system is provided, it causes the boot to
fail, as happens for the lightweight-desktop.tmpl and desktop.tmpl templates
under gnu/system/examples.
* gnu/system/image.scm (operating-system-for-image): Remove file systems whose
mount point is "/boot/efi".
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* gnu/packages/mail.scm (astroid): New variable.
Co-authored with Efraim Flashner <efraim@flashner.co.il>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/mail.scm (gmime)[arguments]: Add the "--enable-introspection"
flag to configure-flags.
[native-inputs]: Add gobject-introspection.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/gnome.scm (libhandy): Update to 1.0.2.
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* gnu/packages/gnome.scm (libhandy)[home-page]: Update.
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* gnu/packages/gnome.scm (arc-theme)[arguments]: Add ‘--disable-cinnamon’
to #:configure-flags.
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* gnu/packages/node.scm (node-10.22): Update to 10.22.1.
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Reported by Florian Pelz:
https://lists.gnu.org/archive/html/guix-devel/2020-11/msg00326.html.
* gnu/installer/utils.scm (call-with-time): New procedure,
(let/time): new macro.
* gnu/installer/parted.scm (with-delay-device-in-use?): Increase the retry
count to 16.
(non-install-devices): Remove the call to with-delay-device-in-use? as it
doesn't return the expected result, and would block much longer now.
(free-parted): Log the time required to sync each device.
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Reported by Florian Pelz:
https://lists.gnu.org/archive/html/guix-devel/2020-11/msg00326.html.
* gnu/installer/utils.scm (call-with-time): New procedure,
(let/time): new macro.
* gnu/installer/parted.scm (with-delay-device-in-use?): Increase the retry
count to 16.
(non-install-devices): Remove the call to with-delay-device-in-use? as it
doesn't return the expected result, and would block much longer now.
(free-parted): Log the time required to sync each device.
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Fixes CVE-2020-28638.
* gnu/packages/crypto.scm (tomb): Update to 2.8
[source]: Remove obsolete patch.
* gnu/packages/patches/tomb-fix-errors-on-open.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/bootloader.scm (efi-bootloader-profile): Allow multiple HOOKS.
(efi-bootloader-chain): Allow multiple HOOKS.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.7.0.
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* gnu/packages/emacs-xyz.scm (emacs-djvu): Update to 1.1.1.
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* gnu/packages/networking.scm (enet): Update to 1.3.17.
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* gnu/packages/mail.scm (mpop): Update to 1.4.11.
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* gnu/packages/video.scm (livemedia-utils)[arguments]: Use CC-FOR-TARGET
and CXX-FOR-TARGET.
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* gnu/packages/video.scm (livemedia-utils): Update to 2020.11.05.
[inputs]: Add openssl.
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* gnu/packages/vpn.scm (wireguard-linux-compat): Update to 1.0.20201112.
[arguments]: Build with linux-libre-5.4.
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* gnu/packages/gnome.scm (arc-theme): Update to 20201013.
[source]: Use new upstream.
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* gnu/packages/databases.scm (python-pypika): Update to 0.44.0.
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* gnu/packages/databases.scm (python-peewee): Update to 3.14.0.
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* gnu/packages/cpp.scm (xsimd)[description]: Expand the @acronym.
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* gnu/packages/cpp.scm (xsimd): Update to 7.4.9.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.7.4.
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* gnu/packages/video.scm (youtube-dl): Update to 2020.11.17.
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* gnu/packages/pdf.scm (pdfpc): Update to 4.4.1.
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This is a followup to 880fe019ae64df37815bbdb1a22305f99dae759d.
* gnu/packages/package-management.scm (guix)[arguments]: Delete
'patch-shebangs' phase.
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* gnu/packages/maths.scm (z3): Update to 4.8.9.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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Fixes <https://bugs.gnu.org/25508>.
* gnu/packages/version-control.scm (git)[arguments]: New phase
restore-sample-hooks-shebang.
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* gnu/packages/bootloaders.scm (grub)[arguments]: Add custom phase to
set BUILD_FREETYPE_* flags.
[native-inputs]: Add freetype.
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* gnu/packages/bootloaders.scm (grub)[arguments]: Skip tests when
cross-compiling.
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* gnu/packages/emacs-xyz.scm (emacs-boon): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/emacs-xyz.scm (emacs-modalka): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to 0.0.0-5.59c7924.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/services/base: Export configuration accessors for mingetty.
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* gnu/packages/gnuzilla.scm (icedove): Update to 78.4.3.
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* gnu/packages/patches/gcc-6-fix-buffer-size.patch: New file.
* gnu/packages/patches/gcc-6-fix-isl-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/embedded.scm (gcc-vc4): Update to commit
0fe4b83897341742f9df65797474cb0feab4b377.
[source]: Add the patches from above.
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* gnu/packages/compression.scm (pzstd)[arguments]: use cc-for-target,
cxx-for-target in make-flags.
[native-inputs]: Only use googletest when compiling natively.
[inputs]: Add googletest when cross compiling.
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* gnu/packages/compression.scm (zstd)[arguments]: When targeting another
system use cc-for-target in make-flags.
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* gnu/packages/compression.scm (bsdiff)[arguments]: Use cc-for-target in
make-flags.
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* gnu/packages/compression.scm (squashfs-tools)[arguments]: Use
cc-for-target in make-flags.
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* gnu/packages/compression.scm (lz4)[arguments]: When targeting another
system use cc-for-target in make-flags.
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