Age | Commit message (Collapse) | Author |
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* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
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These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
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* gnu/packages/python-xyz.scm (python-json5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <https://bugs.gnu.org/34276>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]:
Produce '/xchg/.exit-status' file upon success.
* gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status'
once QEMU has completed and respond accordingly.
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* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
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This fixes CVE-2020-1938 ("Ghostcat").
* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
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This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.
* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
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* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
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* gnu/packages/python-xyz.scm (python-pywinrm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-web.scm (python-requests_ntlm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-crypto.scm (python-kerberos): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
Remove unneeded undead input.
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* gnu/packages/games.scm (7kaa): New variable.
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* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
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* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
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Fixes <https://bugs.gnu.org/24076>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
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* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
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* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services,
(installation-target-os-for-gui-tests): new procedure,
(installation-target-desktop-os-for-gui-tests): new procedure,
(guided-installation-test): add target-os and desktop? arguments. Use
target-os instead of the previous os variable. Pass desktop? argument to
gui-test-program.
(%test-gui-installed-os): Adapt accordingly,
(%test-gui-installed-os-encrypted): ditto,
(%test-gui-installed-desktop-os-encrypted): new exported variable.
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* gnu/installer/tests.scm (choose-services): Turn desktop-environments list
into a choose-desktop-environment procedure. This way, it is easier to select
all desktop-environments or none, in the same way as choose-network-service?
and choose-network-management-tool? arguments.
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* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
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* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
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* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
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* gnu/packages/cran.scm (r-remoter): Fix indentation.
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* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
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* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
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* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
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* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
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* gnu/packages/cran.scm (r-remoter): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/cran.scm (r-getpass): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/cran.scm (r-argon2): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
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* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove
AUTOGEN so that man pages are not regenerated with a fresh date.
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* gnu/tests/nfs.scm ("nfs services are running"): Pass marionette to
WAIT-FOR-FILE.
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* gnu/services/nfs.scm (nfs-shepherd-services): Add shepherd-service providing
/proc/fs/nfsd and make other shepherd services require it.
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* gnu/packages/finance.scm (electron-cash): Update to 4.0.14.
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* gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises,
r-rlang, and r-withr.
[native-inputs]: Add gfortran.
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* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
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* gnu/packages/python-xyz.scm (poetry): Update to 1.0.5.
[propagated-inputs] Add python-clikit, python-importlib-metadata,
python-keyring, and python-pexpect. Remove python-msgpack and python-glob2.
[home-page] Update URL.
[arguments] Remove 'patch-setup-py' phase, and adjust required versions of
keyring, pyrsistent and importlib-metadata.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/python-xyz.scm (python-cachy): Update to 0.3.0.
[arguments]: Replace the 'check' phase.
[native-inputs]: Add memcached and python-pifpaf.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/python-xyz.scm (python-pifpaf): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/python-xyz.scm (python-daiquiri): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/python-xyz.scm (python-json-logger): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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