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2020-07-16gnu: libyaml: Use HTTPS.Tobias Geerinckx-Rice
* gnu/packages/web.scm (libyaml)[source, home-page]: Use HTTPS.
2020-07-16gnu: Use HTTPS for mdc-berlin.de home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata, pigx-rnaseq) (pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS.
2020-07-16gnu: Use HTTPS for biojava.org home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (java-biojava-core) (java-biojava-phylo, java-biojava-alignment, java-biojava-phylo-4.0) (java-biojava-alignment-4.0)[home-page]: Use HTTPS.
2020-07-16gnu: jack@0.125.0: Update URIs.Tobias Geerinckx-Rice
gnu/packages/audio.scm (jack-1)[source]: Use a working mirror. [home-page]: Use HTTPS.
2020-07-16gnu: Use HTTPS for igraph.org.Tobias Geerinckx-Rice
* gnu/packages/graph.scm (igraph, r-igraph)[home-page]: Use HTTPS.
2020-07-16gnu: ghc-pandoc-types: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/haskell-xyz.scm (ghc-pandoc-types)[home-page]: Use HTTPS.
2020-07-16gnu: Use HTTPS for www.yesodweb.com.Tobias Geerinckx-Rice
* gnu/packages/haskell-web.scm (ghc-css-text, ghc-yesod-persistent) [home-page]: Use HTTPS.
2020-07-16gnu: Use HTTPS for github.com (and subdomains) home pages.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and follow permanent redirection. * gnu/packages/check.scm (python-codecov, python-nosexcover) [home-page]: Likewise. * gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr) [home-page]: Likewise. * gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1) (rust-objc-0.2, rust-objc-exception-0.1) (rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0) (rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1) [home-page]: Likewise. * gnu/packages/finance.scm (ledger-agent, keepkey-agent) [home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-tasty-expected-failure) [home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp) (ghc-warp-tls)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags) (ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir) (ghc-pretty-show)[home-page]: Likewise. * gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise. * gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise. * gnu/packages/linux.scm (procenv)[home-page]: Likewise. * gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd) (python-pycares)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-progressbar33, python-whatever) (python-funcy)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby) (ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
2020-07-16gnu: Update Haskell Wiki URIs.Tobias Geerinckx-Rice
* gnu/packages/haskell-web.scm (ghc-hxt-regex-xmlschema)[home-page]: Use HTTPS and follow permanent redirection. * gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-base-unicode-symbols) (ghc-colour, ghc-data-accessor, ghc-data-accessor-transformers) (ghc-gluraw, ghc-glut, ghc-gnuplot, ghc-haddock-test, ghc-opengl) (ghc-openglraw, ghc-storablevector)[home-page]: Likewise.
2020-07-16gnu: bombadillo: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/web-browsers.scm (bombadillo)[home-page]: Use HTTPS.
2020-07-16gnu: lsof: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[home-page]: Use HTTPS.
2020-07-16gnu: lirc: Use HTTPS home page.Tobias Geerinckx-Rice
Also add a missing copyright line for an obvious nckx phase. * gnu/packages/lirc.scm (lirc)[home-page]: Use HTTPS.
2020-07-16gnu: lv2: Use HTTPS.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (lv2)[source, home-page]: Use HTTPS.
2020-07-16gnu: Add cl-opticl.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-opticl, cl-opticl): New variables.
2020-07-16gnu: Add cl-pngload.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-pngload, cl-pngload, ecl-pngload): New variables.
2020-07-16gnu: Add cl-zpb-exif.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-zpb-exif, cl-zpb-exif, ecl-zpb-exif): New variables.
2020-07-16gnu: Add cl-3bz.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-3bz, cl-3bz, ecl-3bz): New variables.
2020-07-16gnu: Add cl-mmap.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-mmap, cl-mmap, ecl-mmap): New variables.
2020-07-16gnu: Add cl-retrospectiff.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-retrospectiff, cl-retrospectiff, ecl-retrospectiff): New variables.
2020-07-16gnu: Add cl-opticl-core.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-opticl-core, cl-opticl-core, ecl-opticl-core): New variables.
2020-07-16gnu: Add cl-freetype2.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-freetype2, cl-freetype2, ecl-freetype2): New variables.
2020-07-16gnu: Add cl-skippy.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-skippy, cl-skippy, ecl-skippy): New variables.
2020-07-16gnu: Add cl-deflate.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-deflate, cl-deflate, ecl-deflate): New variables.
2020-07-16gnu: Add cl-com.gigamonkeys.binary-data.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-com.gigamonkeys.binary-data, cl-com.gigamonkeys.binary-data, ecl-com.gigamonkeys.binary-data): New variables.
2020-07-16gnu: Add cl-tga.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-tga, cl-tga, ecl-tga): New variables.
2020-07-16gnu: r-quantreg: Update to 5.61.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.61. [propagated-inputs]: Add r-conquer.
2020-07-16gnu: r-r-rsp: Update to 0.44.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.44.0.
2020-07-16gnu: r-tibble: Update to 3.0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.3.
2020-07-16gnu: r-rlang: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.7.
2020-07-16gnu: r-brms: Update to 2.13.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.13.3.
2020-07-16gnu: r-gamlss: Update to 5.1-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
2020-07-16gnu: r-gamlss-dist: Update to 5.1-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
2020-07-16gnu: r-pillar: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.4.6. [propagated-inputs]: Add r-ellipsis and r-lifecycle.
2020-07-16gnu: r-mice: Update to 3.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.10.0. [propagated-inputs]: Add r-generics.
2020-07-16gnu: r-broom: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.7.0. [propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and r-rlang.
2020-07-16gnu: r-rhdf5lib: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.1.
2020-07-16gnu: r-qtl2: Update to 0.22-11.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-11.
2020-07-16gnu: r-genomicfeatures: Update to 1.40.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.1.
2020-07-16gnu: r-summarizedexperiment: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.2.
2020-07-16gnu: r-activepathways: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2. [propagated-inputs]: Remove r-metap.
2020-07-16gnu: r-rsubread: Update to 2.2.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
2020-07-16gnu: Add r-conquer.Ricardo Wurmus
* gnu/packages/cran.scm (r-conquer): New variable.
2020-07-16gnu: r-cairo: Update to 1.5-12.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
2020-07-16gnu: r-gplots: Update to 3.0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.4. [native-inputs]: Add r-knitr.
2020-07-16gnu: r-xml: Update to 3.99-0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
2020-07-16gnu: r-tibble: Update to 3.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
2020-07-16gnu: r-svglite: Update to 1.2.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2. [native-inputs]: Add r-knitr.
2020-07-16gnu: r-rstan: Update to 2.21.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.21.1. [propagated-inputs]: Add r-rcppparallel and r-v8. [native-inputs]: Add r-knitr.
2020-07-16gnu: r-loo: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): Update to 2.3.0. [native-inputs]: Add r-knitr.
2020-07-16gnu: r-rstantools: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstantools): Update to 2.1.1. [propagated-inputs]: Add r-rcppparallel. [native-inputs]: Add r-knitr.
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