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2021-10-08gnu: julia-nnlib: Enable tests.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-nnlib)[arguments]: Don't skip tests. Rename drop-cuda-support phase to skip-cuda-tests and remove extra call to cuda library.
2021-10-08gnu: julia-nnlib: Update to 0.7.29.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-nnlib): Update to 0.7.29.
2021-10-08gnu: julia-staticarrays: Update to 1.2.13.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.13.
2021-10-08gnu: julia-reexport: Update to 1.2.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-reexport): Update to 1.2.2.
2021-10-08gnu: pigx-scrnaseq: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: pigx-rnaseq: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-rnaseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: pigx-chipseq: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-chipseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: pigx-sars-cov2-ww: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: pigx-bsseq: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: ghc-haskeline: Remove version postfix from variable name.Lars-Dominik Braun
* gnu/packages/haskell-xyz.scm (ghc-haskeline-0.8): Rename to… (ghc-haskeline): …this.
2021-10-08gnu: ghc-repline: Remove version 0.2.0.0.Lars-Dominik Braun
Not required by any package in the tree. * gnu/packages/haskell-xyz.scm (ghc-repline-0.3): Merge into… (ghc-repline): …this. * gnu/packages/dhall.scm (dhall): Use ghc-repline.
2021-10-08gnu: python-pypandoc: Upgrade to 1.6.4.Lars-Dominik Braun
Required for the updated pandoc. * gnu/packages/python-xyz.scm (python-pypandoc): Upgrade to 1.6.4. [native-inputs]: Add texlive-iftex.
2021-10-08gnu: ngless: Fix build.Lars-Dominik Braun
Apply upstream patch to restore compatibility with current Stackage. * gnu/packages/patches/ngless-unliftio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bioinformatics.scm (ngless): Use it.
2021-10-08gnu: idris: Fix build.Xinglu Chen
Backport some commits from upstream. * gnu/packages/patches/idris-build-with-haskeline-0.8.patch: * gnu/packages/patches/idris-build-with-megaparsec-9.patch: New patches * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/idris.scm (idris): Use them. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-10-08gnu: ghc-silently: Remove unused input.Lars-Dominik Braun
Plus it’s commented out anyway. * gnu/packages/haskell-xyz.scm (ghc-silently): Remove commented out inputs.
2021-10-08gnu: ruby-pandoc-ruby: Disable tests.Lars-Dominik Braun
* gnu/packages/ruby.scm (ruby-pandoc-ruby) [arguments]: Disable tests, remove obsolete phase.
2021-10-08gnu: hedgewars: Fix build.Lars-Dominik Braun
* gnu/packages/patches/hedgewars-network-bsd.patch: Import upstream patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/games.scm (hedgewars): Use it.
2021-10-08gnu: cabal-install: Build with GHC 8.10.Lars-Dominik Braun
* gnu/packages/patches/cabal-install-base16-bytestring1.0.patch: New patch. * gnu/packages/patches/cabal-install-ghc8.10.patch: Ditto. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/haskell-apps.scm (cabal-install) [source]: Use them.
2021-10-08gnu: Update Haskell ecosystem.Lars-Dominik Braun
Bump packages’ versions to the lastest Stackage or Hackage release. Since packages are interdependent, do so in a single commit. 525 packages have been updated. These packages have been removed, because they fail to build, have no newer version available and no dependencies: corrode ghc-easytest ghc-edisonapi ghc-edisoncore ghc-pandoc-types ghc-regex-tdfa-text These have been removed, because they are no longer required: ghc-happy-1.19.9 ghc-prettyprinter-1.6 ghc-protolude-0.3 ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc does not use them any more. Co-authored-by: Xinglu Chen <public@yoctocell.xyz>
2021-10-08gnu: ghc-8: Update to 8.10.Lars-Dominik Braun
* gnu/packages/haskell.scm (ghc-8): Update to 8.10. (ghc-8.8): Rename to just ghc. (ghc-8.10): Dito.
2021-10-08gnu: ocaml-graphics: Update to 5.1.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-graphics): Update to 5.1.2.
2021-10-08gnu: ocaml-version: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-version)[properties]: Add upstream-name.
2021-10-08gnu: ocaml-cairo2: Update to 0.6.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-cairo2): Update to 0.6.2. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Remove file. * gnu/local.scm (dist_patch_DATA): Remove it.
2021-10-08gnu: ocaml-bisect-ppx: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-bisect-ppx)[properties]: Add upstream-name.
2021-10-08gnu: ocaml-base64: Update to 3.5.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-base64): Update to 3.5.0.
2021-10-08gnu: frama-c: Update to 23.1.Julien Lepiller
* gnu/packages/maths.scm (frama-c): Update to 23.1.
2021-10-08gnu: why3: Update to 1.4.0.Julien Lepiller
* gnu/packages/maths.scm (why3): Update to 1.4.0.
2021-10-08gnu: camlzip: Update to 1.11.Julien Lepiller
* gnu/packages/ocaml.scm (camlzip): Update to 1.11.
2021-10-08gnu: coq: Add upstream-name.Julien Lepiller
This prevents an error on inherited packages when running the updater. * gnu/packages/coq.scm (coq)[properties]: Add upstream-name.
2021-10-08gnu: ocaml-ctypes: Update to 0.19.1.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-ctypes): Update to 0.19.1. [arguments]<#:tests?>: Enable. <#phases>{make-writable}: Simplify. [inputs]: Remove ocaml-topkg and opam. Move ocaml-ounit and ocaml-lwt to ... [native-inputs]: ... here. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-migrate-parsetree: Update to 2.2.0.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 2.2.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-bigstringaf: Update to 0.8.0.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-bigstringaf): Update to 0.8.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-uuidm: Update to 0.9.7.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-uuidm): Update to 0.9.7. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-cppo: Update to 1.6.8.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-cppo): Update to 1.6.8. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-extlib: Update to 1.7.8.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-extlib): Update to 1.7.8. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-cmdliner: Update to 1.0.4.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-cmdliner): Update to 1.0.4. [source]: Use HTTPS URL. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: ocaml-alcotest: Update to 1.4.0.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-alcotest): Update to 1.4.0. [source]: Use Git repo instead of GitHub tarball. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-10-08gnu: caf: Update to 0.18.5.Greg Hogan
* gnu/packages/cpp.scm (caf): Update to 0.18.5. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-10-08gnu: pcg-cpp: Update to 0.98.1-ffd522e7.Greg Hogan
* gnu/packages/cpp.scm (pcg-cpp): Update to 0.98.1-ffd522e7. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-10-08gnu: folly: Update to 2021.10.04.00.Greg Hogan
* gnu/packages/cpp.scm (folly): Update to 2021.10.04.00. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-10-08gnu: ceph: Fix breaking change in snappy.Greg Hogan
* gnu/packages/storage.scm (ceph)[source]: Add patch. * gnu/packages/patches/ceph-fix-snappy-breaking-change.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-10-07gnu: Add erlang-covertool.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-covertool): New variable.
2021-10-07gnu: Add erlang-rebar3-proper.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-rebar3-proper): New variable.
2021-10-07gnu: Add erlang-rebar3-git-vsn.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-rebar3-git-vsn): New variable.
2021-10-07gnu: Add erlang-rebar3-raw-deps.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-rebar3-raw-deps): New variable.
2021-10-07gnu: Add erlang-proper.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-proper): New variable.
2021-10-07gnu: Add erlang-jsone.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-jsone): New variable.
2021-10-07gnu: Add erlang-edown.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-edown): New variable.
2021-10-07gnu: Add rebar3.Hartmut Goebel
* gnu/packages/erlang.scm (rebar3): New variable.
2021-10-07gnu: Add erlang-relx.Hartmut Goebel
* gnu/packages/erlang.scm (erlang-relx): New variable.
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