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2021-05-29gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-29gnu: nyacc: Update to 1.04.0.Ricardo Wurmus
* gnu/packages/mes.scm (nyacc): Update to 1.04.0.
2021-05-29Revert "gnu: Add mosaicatcher."Christopher Baines
mosaicatcher-unbundle-htslib.patch is missing. This reverts commit b1ae0f30d856503fa311d380584a6d7c80559332.
2021-05-29gnu: emacs-cwl-mode: Update to 0.2.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-cwl-mode): Update to 0.2.6.
2021-05-29gnu: emacs-csharp-mode: Update to 0.11.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.11.0.
2021-05-29gnu: emacs-counsel-jq: Update to 1.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-counsel-jq): Update to 1.1.
2021-05-28gnu: emacs-cider: Update to 1.1.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.1.1.
2021-05-28gnu: emacs-chronometrist: Update to 0.7.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.7.0.
2021-05-28gnu: emacs-auto-sudoedit: Update to 1.1.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-auto-sudoedit): Update to 1.1.0.
2021-05-28gnu: emacs-amx: Update to 3.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-amx): Update to 3.4.
2021-05-28gnu: xjobs: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/parallel.scm (xjobs)[properties]: New field.
2021-05-28gnu: Add xjobs.Stefan Reichör
* gnu/packages/parallel.scm (xjobs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: hostscope: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/monitoring.scm (hostscope)[properties]: New field.
2021-05-28gnu: Add hostscope.Stefan Reichör
* gnu/packages/monitoring.scm (hostscope): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: Add mbuffer.Stefan Reichör
* gnu/packages/networking.scm (mbuffer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: ipopt: Update to 3.13.4Eric Brown
* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: Add cbc.Eric Brown
* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-28gnu: gnutls: Replace with 3.6.16 [fixes CVE-2021-20305].Solene Rapenne
* gnu/packages/tls.scm (gnutls)[replacement]: New field. (gnutls-3.6.16): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-28gnu: jami-gnome: Include phases from the glib-or-gtk-build-system.Maxim Cournoyer
This makes Jami less dependent on the environment it is run within; for example when using Jami on a foreign distributions. * gnu/packages/jami.scm (jami-gnome)[imported-modules]: New argument. [modules]: New argument. [phases]{glib-or-gtk-compile-schemas, glib-or-gtk-wrap}: New phases. Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
2021-05-28gnu: cuirass: Update to 1.0.0-22.3ac739b.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-22.3ac739b.
2021-05-28gnu: tryton: Allow disabling the test suite.Maxime Devos
* gnu/packages/tryton.scm (tryton-phases): Respect 'tests?' in the 'check' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: tryton: Use local 'inputs' instead of global '%build-inputs'.Maxime Devos
The former is preferred above the latter. * gnu/packages/tryton.scm (tryton-phases): Look up "trytond" in the 'inputs' argument instead of in '%build-inputs'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: tryton: Factor out custom ‘check’ phase.Maxime Devos
* gnu/packages/tryton.scm (tryton-phases): New procedure. (tryton-arguments): New procedure. (python-trytond-account)[arguments]: Use 'tryton-phases'. (python-trytond-account-invoice)[arguments]: Likewise. (python-trytond-account-invoice-stock)[arguments]: Likewise. (python-trytond-account-product)[arguments]: Likewise. (python-trytond-analytic-account)[arguments]: Likewise. (python-trytond-company)[arguments]: Likewise. (python-trytond-country)[arguments]: Likewise. (python-trytond-currency)[arguments]: Likewise. (python-trytond-party)[arguments]: Likewise. (python-trytond-product)[arguments]: Likewise. (python-trytond-purchase)[arguments]: Likewise. (python-trytond-purchase-request)[arguments]: Likewise. (python-trytond-stock)[arguments]: Likewise. (python-trytond-stock-lot)[arguments]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: libraft: Update to 0.10.1Dion Mendel
* gnu/packages/cluster.scm (libraft): Update to 0.10.1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: intel-mpi-benchmarks: Remove top-level reference to 'openmpi'.Ludovic Courtès
This circular dependency could lead to "unbound variable" errors when running 'guix show openmpi' or similar. * gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Inline code formerly in 'intel-mpi-benchmarks' procedure. (intel-mpi-benchmarks): Remove.
2021-05-28gnu: cuirass: Update to 1.0.0-21.65ae16b.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-21.65ae16b.
2021-05-28gnu: hackrf: Update to 2021.03.1.Guillaume Le Vaillant
* gnu/packages/radio.scm (hackrf): Update to 2021.03.1.
2021-05-28gnu: Add python-cachetools.Roel Janssen
* gnu/packages/python-xyz.scm (python-cachetools): New variable.
2021-05-28gnu: gnuradio: Add python-matplotlib dependency explicitly.Guillaume Le Vaillant
* gnu/packages/radio.scm (gnuradio)[inputs]: Add python-matplotlib.
2021-05-28gnu: Add python-argopt.Roel Janssen
* gnu/packages/python-xyz.scm (python-argopt): New variable.
2021-05-27gnu: Add python-pyega3.Roel Janssen
* gnu/packages/bioinformatics.scm (python-pyega3): New variable.
2021-05-27gnu: Add python-htsget.Roel Janssen
* gnu/packages/bioinformatics.scm (python-htsget): New variable.
2021-05-27gnu: Add python-helper.Roel Janssen
* gnu/packages/python-xyz.scm (python-helper): New variable.
2021-05-27gnu: Add python-logutils.Roel Janssen
* gnu/packages/python-xyz.scm (python-logutils): New variable.
2021-05-27gnu: entr: Update to 4.9.Solene Rapenne
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27gnu: guix-build-coordinator: Update to 0-29.8c98f47.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-29.8c98f47.
2021-05-27gnu: botan: Respect #:tests?.Jack Hill
* gnu/packages/crypto.scm (botan)[arguments]: Respect #:tests? in the custom 'check' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27gnu: botan: Update to 2.18.1.Jack Hill
* gnu/packages/crypto.scm (botan): Update to 2.18.1. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-05-27gnu: phodav: Add gsettings-desktop-schemas input.Solene Rapenne
* gnu/packages/gnome.scm (phodav)[native-inputs]: Add gsettings-desktop-schemas. Fixes: https://issues.guix.gnu.org/48414 Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-05-27gnu: lksctp-tools: Update to 1.0.19.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-27gnu: lksctp-tools: Edit synopsis & description.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (synopsis, description): Improve.
2021-05-27gnu: libndp: Update to 1.8.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (libndp): Update to 1.8.
2021-05-27gnu: ccl: Update to 1.12.1.Tobias Geerinckx-Rice
* gnu/packages/lisp.scm (ccl): Update to 1.12.1. [inputs]: Keep using the 1.12 bootstrap for ARM.
2021-05-27gnu: shotwell: Update to 0.30.12.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (shotwell): Update to 0.30.12.
2021-05-27gnu: libopenmpt: Update to 0.5.9.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (libopenmpt): Update to 0.5.9.
2021-05-27gnu: iperf: Omit static library.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (iperf)[arguments]: Add "--disable-static" configure flag.
2021-05-27gnu: iperf: Update to 3.10.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (iperf): Update to 3.10. [source]: Build from git.
2021-05-27gnu: lightspark: Update to 0.8.4.1.Tobias Geerinckx-Rice
* gnu/packages/animation.scm (lightspark): Update to 0.8.4.1.
2021-05-27gnu: nftables: Update to 0.9.9.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (nftables): Update to 0.9.9.
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