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2020-04-28gnu: r-seurat: Update to 3.1.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5. [propagated-inputs]: Remove r-metap.
2020-04-28gnu: r-topicmodels: Update to 0.2-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
2020-04-28gnu: r-stopwords: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-stopwords): Update to 2.0. [propagated-inputs]: Add r-desc and r-usethis.
2020-04-28gnu: r-fda: Update to 5.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
2020-04-28gnu: r-abtest: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1. [propagated-inputs]: Add r-qgam; remove r-vgam.
2020-04-28gnu: Add r-qgam.Ricardo Wurmus
* gnu/packages/cran.scm (r-qgam): New variable.
2020-04-28gnu: r-systemfonts: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0. [inputs]: Remove freetype. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-dalex: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0. [propagated-inputs]: Add r-ibreakdown and r-ingredients.
2020-04-28gnu: r-rex: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rex): Update to 1.2.0. [propagated-inputs]: Remove r-magrittr. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-optparse: Update to 1.6.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-sf: Update to 0.9-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
2020-04-28gnu: r-future-apply: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
2020-04-28gnu: r-etm: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-etm): Update to 1.1.
2020-04-28gnu: r-future: Update to 1.17.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
2020-04-28gnu: r-protviz: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
2020-04-28gnu: r-rgl: Update to 0.100.54.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
2020-04-28gnu: r-ggeffects: Update to 0.14.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
2020-04-28gnu: r-bayestestr: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
2020-04-28gnu: r-emmeans: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-raster: Update to 3.1-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
2020-04-28gnu: r-insight: Update to 0.8.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
2020-04-28gnu: r-tinytex: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
2020-04-28gnu: r-tsp: Update to 1.1-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
2020-04-28gnu: r-broom: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-distillery: Update to 1.0-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
2020-04-28gnu: r-ff: Update to 2.2-14.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
2020-04-28gnu: r-powerlaw: Update to 0.70.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6. [propagated-inputs]: Remove r-vgam; add r-pracma. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-shinyfiles: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
2020-04-28gnu: Add r-ibreakdown.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibreakdown): New variable.
2020-04-28gnu: Add r-ingredients.Ricardo Wurmus
* gnu/packages/cran.scm (r-ingredients): New variable.
2020-04-28gnu: r-purrr: Update to 0.3.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-plotrix: Update to 3.7-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
2020-04-28gnu: r-withr: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-xml2: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
2020-04-28gnu: r-dbplyr: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-tibble: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
2020-04-28gnu: r-foreign: Update to 0.8-78.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
2020-04-28gnu: r-with-tests, r-minimal: Update to 4.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0. (r-with-tests)[arguments]: Add phase "set-locales". [native-inputs]: Add texlive-ae, texlive-inconsolata, and texlive-latex-xkeyval to texlive-union. [inputs]: Replace pcre with pcre2.
2020-04-28gnu: stellarium: Update to 0.20.1.Björn Höfling
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
2020-04-27gnu: Update minimap2 to 2.17.Roel Janssen
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27gnu: Add sbcl-stumpwm-swm-gaps.Oleg Pykhalov
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
2020-04-27gnu: tarsplitter: Fix typo in description (spilt/split).Vincent Legoll
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
2020-04-27gnu: Add wf-recorder.Alex McGrath
* gnu/packages/video.scm (wf-recorder): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-27gnu: ktsuss: Use setuid "su" and "sudo" commands.Raghav Gururajan
This has ktsudo actually gain root access. * gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo} file names, use the setuid' verrsions.
2020-04-27gnu: herbstluftwm: Update to 0.8.1Boris A. Dekshteyn
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27gnu: fldigi: Update to 4.1.12.Guillaume Le Vaillant
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
2020-04-27file-systems: mount the PID cgroup filesystem.Jakub Kądziołka
* gnu/system/file-systems.scm (%control-groups): Add "pids". * gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO. This has allowed me to make a specific configuration of nsjail work.
2020-04-27gnu: Add python-scikit-rebate.Roel Janssen
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
2020-04-27gnu: Add python-deeptools.Roel Janssen
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
2020-04-27gnu: Add python-deeptoolsintervals.Roel Janssen
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
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