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2021-06-02gnu: r-mvabund: Update to 4.1.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.12.
2021-06-02gnu: r-sjplot: Update to 2.8.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.8.
2021-06-02gnu: r-effectsize: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.5.
2021-06-02gnu: r-bayestestr: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.0.
2021-06-02gnu: r-emmeans: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.1.
2021-06-02gnu: r-manipulatewidget: Update to 0.11.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.0. [propagated-inputs]: Add r-shinyjs. [native-inputs]: Add r-knitr.
2021-06-02gnu: r-insight: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.14.1.
2021-06-02gnu: r-rdpack: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.2.
2021-06-02gnu: r-fansi: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-fansi): Update to 0.5.0.
2021-06-02gnu: r-zip: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-zip): Update to 2.2.0.
2021-06-02gnu: r-signal: Update to 0.7-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-signal): Update to 0.7-7.
2021-06-02gnu: r-tinytex: Update to 0.32.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.32.
2021-06-02gnu: r-fitdistrplus: Update to 1.1-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-5.
2021-06-02gnu: r-inline: Update to 0.3.19.Ricardo Wurmus
* gnu/packages/cran.scm (r-inline): Update to 0.3.19.
2021-06-02gnu: r-extremes: Update to 2.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-extremes): Update to 2.1-1.
2021-06-02gnu: r-bisquerna: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5. [native-inputs]: Add r-knitr.
2021-06-02gnu: python-django@2.2: Update to 2.2.24 [fixes CVE-2021-33203, CVE-2021-33571].Marius Bakke
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.24.
2021-06-02gnu: python-django: Update to 3.2.4 [fixes CVE-2021-33203, CVE-2021-33571].Marius Bakke
* gnu/packages/django.scm (python-django): Update to 3.2.4.
2021-06-02gnu: Add udftools.Ron Nazarov via Guix-patches via
* gnu/packages/file-systems.scm (udftools): New variable. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-02gnu: ispell: Update to 3.4.03.Tobias Geerinckx-Rice
* gnu/packages/aspell.scm (ispell): Update to 3.4.03.
2021-06-02gnu: Add biobambam2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (biobambam2): New variable.
2021-06-02gnu: Add libmaus2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libmaus2): New variable.
2021-06-02gnu: r-with-tests: Update to 4.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.0.
2021-06-02gnu: memtester: Update to 4.5.1.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (memtester): Update to 4.5.1.
2021-06-02gnu: osip: Update to 5.2.1.Tobias Geerinckx-Rice
* gnu/packages/telephony.scm (osip): Update to 5.2.1.
2021-06-02gnu: retroarch: Update to 1.9.4.Tobias Geerinckx-Rice
* gnu/packages/emulators.scm (retroarch): Update to 1.9.4.
2021-06-02gnu: libavif: Update to 0.9.1.Tobias Geerinckx-Rice
* gnu/packages/image.scm (libavif): Update to 0.9.1.
2021-06-02gnu: python-vedo: Make pkg-config a native input.Paul Garlick
* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to... [native-inputs]: ...here.
2021-06-02gnu: icecat: Update to 78.11.0-guix0-preview1 [fixes CVE-2021-29967].Mark H Weaver
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update upstream source hash.
2021-06-02gnu: python-hg-evolve: Update to 10.3.1.Xinglu Chen
* gnu/packages/version-control.scm (python-hg-evolve): Update to 10.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-02gnu: python-sphinx-gallery: Update to 0.9.0.Vinicius Monego
* gnu/packages/sphinx.scm (python-sphinx-gallery): Update to 0.9.0. [source]: Build from PyPI. [arguments]: Enable tests. Add custom 'check phase and phase to make test files writable. [native-inputs]: Add python-joblib, python-matplotlib, python-numpy, python-pillow, python-pytest, python-pytest-cov, python-sphinx. Remove python-pytest-runner. [home-page]: Follow redirect. (python2-sphinx-gallery): Remove package. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-02gnu: redis: Update to 6.2.4 [security fixes].Simon Streit
Fixes CVE-2021-29477. * gnu/packages/databases.scm (redis): Update to 6.2.4. [arguments]: Disable the 'integration/failover' test. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-06-02gnu: Add frama-c.Julien Lepiller
* gnu/packages/maths.scm (frama-c): New variable.
2021-06-02gnu: Add why3.Julien Lepiller
* gnu/packages/maths.scm (why3): New variable.
2021-06-01gnu: rtl8821ce-linux-module: Update to 0.0.0-3.897e7c4.Zhu Zihao
Fix the broken build with linux-libre 5.12. * gnu/packages/linux.scm (rtl8821ce-linux-module): Update to 0.0.0-3.897e7c4. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-01machine: ssh: Gracefully handle failure of the effectful bits.Ludovic Courtès
Previously, '&inferior-exception' raised by 'upgrade-shepherd-services' and co. would go through as-is, leaving users with an ugly backtrace. * gnu/machine/ssh.scm (deploy-managed-host): Define 'eval/error-handling' and use it in lieu of EVAL as arguments to 'switch-to-system', 'upgrade-shepherd-services', and 'install-bootloader'.
2021-06-01services: cuirass: Do not export record type descriptors.Ludovic Courtès
* gnu/services/cuirass.scm (<cuirass-remote-server-configuration>) (<cuirass-configuration>, <cuirass-remote-worker-configuration>): Do not export.
2021-06-01services: cuirass: Create the profile and GC root directory.Ludovic Courtès
* gnu/services/cuirass.scm (cuirass-activation): Create /var/guix/profiles/per-user/cuirass/cuirass or similar.
2021-06-01maint: Require Guile 3.0.Ludovic Courtès
* configure.ac: Require Guile 3.0. * doc/guix.texi (Requirements): Adjust accordingly. * gnu/packages/package-management.scm (guile2.2-guix): Remove. * guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'. * guix/scripts/deploy.scm (deploy-machine*): Likewise. * guix/store.scm (call-with-store): Likewise. * guix/swh.scm (http-get*, http-post*): Likewise. * guix/ui.scm (without-compiler-optimizations, guard*) (call-with-error-handling): Likewise.
2021-06-01gnu: llvm-7: Update to 7.1.0.Efraim Flashner
* gnu/packages/llvm.scm (llvm-7): Update to 7.1.0.
2021-06-01gnu: unbound: Enable DoH support.Marius Bakke
* gnu/packages/dns.scm (unbound)[inputs]: Add NGHTTP2:LIB. [arguments]: Add "--with-libnghttp2" to #:configure-flags.
2021-06-01gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 91. (%chromium-version): Set to 91.0.4472.77. (%ungoogled-revision): Set to 91.0.4472.77-1-0-g6802c88. (%debian-patches): Remove obsolete patch. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Add substitution for an unbundling file. (ungoogled-chromium): Update hash. [arguments]: Add a substitution previously provided by a Debian patch. [inputs]: Change from ICU-68 to ICU-69.
2021-06-01gnu: icu4c: Add 69.1.Marius Bakke
* gnu/packages/icu4c.scm (icu4c-69): New public variable.
2021-06-01gnu: gcc-9: Update to 9.4.0.Efraim Flashner
* gnu/packages/gcc.scm (gcc-9): Update to 9.4.0.
2021-06-01gnu: musescore: Add missing QML imports.Leo Prikler
This fixes an issue wherein the palettes sidebar would turn up empty. * gnu/packages/music.scm (musescore)[build-system]: Use qt-build-systems. [inputs]: Add qtgraphicaleffects.
2021-06-01gnu: rust-cbindgen@0.17: Update to 0.19.0.Jonathan Brielmaier
* gnu/packages/rust-apps.scm (rust-cbindgen-0.17): Update to 0.19.0 and rename to rust-cbindgen-0.19.
2021-06-01tests: hpcguix-web: Fix it.Mathieu Othacehe
* gnu/tests/web.scm (run-hpcguix-web-server-test): Increase the VM memory size and add retries for the http-get test.
2021-06-01gnu: Add bamutils.Roel Janssen
* gnu/packages/bioinformatics.scm (bamutils): New variable.
2021-06-01gnu: sbcl: Update to 2.1.5.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl): Update to 2.1.5.
2021-06-01gnu: Add python-vedo.Paul Garlick
* gnu/packages/python-science.scm (python-vedo): New variable.
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