Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.5.1.
[propagated-inputs]: Add python-pandas.
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* gnu/packages/admin.scm (fail2ban): New variable.
* gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch,
gnu/packages/patches/fail2ban-paths-guix-conf.patch,
gnu/packages/patches/fail2ban-python310-server-action.patch,
gnu/packages/patches/fail2ban-python310-server-actions.patch,
gnu/packages/patches/fail2ban-python310-server-jails.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[arguments]: Use
G-expressions.
<#:phases>: Remove trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs,
inputs, propagated-inputs]: Remove labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (dealii): Update to 9.4.0.
[propagated-inputs]: Replace sundials-5 with sundials.
(dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with
sundials-openmpi.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use
G-expressions.
(dealii-openmpi)[arguments]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]:
Add gcc-7 to fix the failing build with newer versions of gcc.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioconductor.scm (r-muscat): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/mail.scm (mu): Update to 1.8.7.
[source]: Fetch from git.
[build-system]: Use meson-build-system.
[native-inputs]: Remove glib:bin and tzdata; add gnupg and texinfo; use new
style.
[inputs]: Remove guile.
[arguments]: Remove obsolete 'patch-configure, 'fix-ffi, and
'check-tz-setup phases. Rename 'patch-bin-sh-in-tests
to 'patch-bin-references and update it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/web-browsers.scm (qutebrowser): Fix indentation.
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Fixes <https://issues.guix.gnu.org/56864>, which is a regression introduced
with a0beb297a352930b89051ff258a06d78f224d6b9.
* gnu/packages/web-browsers.scm (qutebrowser)
[phases]{wrap-qt-process-path}: Do not use the (no longer valid)
"qtwebengine-5" label; instead, locate QtWebEngineProcess via
'search-input-file'.
Reported-by: Jack Hill <jackhill@jackhill.us>
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* gnu/packages/bioinformatics.scm (r-millefy): New variable.
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ppc64 and aarch64 do not raise exception and thus output and exit code
for test is different.
See:
https://github.com/Exiv2/exiv2/issues/365 and
https://github.com/Exiv2/exiv2/issues/933
* gnu/packages/image.scm (exiv2)[arguments]: Add 'adjust-tests' phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-biblib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This is a patch that fixes "<executable name>: this program must be setgid smtpq".
* gnu/services/mail.scm (<opensmtpd-configuration>)[setgid-commands?]: New field.
(opensmtpd-set-gids): New procedure.
(opensmtpd-service-type)[extensions]: Add SETUID-PROGRAM-SERVICE-TYPE extension.
* doc/guix.texi (Mail Services): Document it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tor.scm (tractor): Update to 3.14.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after
“i.e.”.
* gnu/packages/code.scm (xenon)[description]: Same.
* gnu/packages/cran.scm (r-crosstalk)[description]: Same.
* gnu/packages/python-xyz.scm (python-radon)[description]: Same.
* gnu/packages/statistics.scm (r-logspline)[description]: Same.
* gnu/packages/suckless.scm (tabbed)[description]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing
comma to linker flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/guile-xyz.scm (guile-lens)
[phases]{run-hall}: replace "dist" to "build-system".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with
librsvg-for-system.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/security-token.scm (cardpeek): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/astronomy.scm: (python-sep): Update to 1.2.1.
Inherit from libsep
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/astronomy.scm: (libsep): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tls.scm (gnutls-latest): New variable.
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* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase
'set-numba-cache-dir.
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* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable
test_densmap_trustworthiness_on_iris_supervised.
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* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase
to set NUMBA_CACHE_DIR.
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* gnu/packages/patches/jami-fix-esc-bug.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/jami.scm (%jami-sources): Apply it.
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* gnu/packages/jami.scm (jami): Update to 20220726.1515.da8d1da.
[configure-flags]: New argument.
[phases]{fix-version-string}: Adjust file name.
{use-desktop-opengl}: Delete obsolete phase.
{patch-source}: New phase.
[native-inputs]: Add googletest and vulkan-headers. Replace qttools-5 with
qttools.
[inputs]: Add libxkbcommon, qt5compat, qtnetworkauth, qtpositioning and
vulkan-loader. Remove qtwebengine-5, qtwebchannel-5, qtgraphicaleffects,
qtquickcontrols-5 and qtquickcontrols2-5. Update qtsvg-5, qtmultimedia-5 and
qtdeclarative-5 to their Qt 6 equivalent.
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* gnu/packages/jami.scm (jami-gnome): Delete package, deprecating it for jami.
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* gnu/packages/jami.scm (jami-libclient): Delete variable.
(libringclient): Likewise.
(jami-gnome)[inputs]: Remove jami-libclient.
(jami)[inputs]: Likewise.
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* gnu/packages/jami.scm (libjami)[configure-flags]: Add '--enable-agent' and
remove FIXME.
[tests?]: Update comment.
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* gnu/packages/patches/jami-fix-crash-on-quit.patch: Delete file.
* gnu/packages/patches/jami-images-loading.patch: Likewise.
* gnu/packages/patches/jami-libclient-audio-managers.patch: Likewise.
* gnu/packages/patches/jami-memory-usage.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register removed patches.
* gnu/packages/jami.scm (%jami-version): Update to 20220726.1515.da8d1da.
(libjami)[configure-flags]: Add '--disable-static'.
(jami-apply-custom-patches): Adjust for top directory renaming.
(%ffmpeg-default-configure-flags): Add muxer support
for g726 and g726le. Add demuxer support for g723_1, g726 and g726le. Add
encoder/decoder support for g726, g726le and g723_1. Add decoder support for
g729.
(ffmpeg-jami)[patches]: Add 'libopusenc-reload-packet-loss-at-encode'.
(jami-libclient)[native-inputs]: New field.
[inputs]: Add ffmpeg-jami and libxkbcommon.
[propagated-inputs]: Replace qtbase-5 with qtbase.
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* gnu/packages/qt.scm (qtpositioning): New variable.
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* gnu/packages/qt.scm (qtnetworkauth): New variable.
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Automated with:
git grep -l qtnetworkauth | xargs sed 's/\bqtnetworkauth\b/\0-5/g' -i
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* gnu/packages/qt.scm (qttools): New variable.
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Automated with:
git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i
git checkout NEWS
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* gnu/packages/qt.scm (qt5compat): New variable.
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* gnu/packages/qt.scm (qtwebengine): New variable.
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Automated with:
git grep -l qtwebengine | xargs sed 's/\bqtwebengine\b/\0-5/g' -i
git checkout NEWS
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* gnu/packages/qt.scm (qtwebchannel): New variable.
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Automated via:
git grep -l qtwebchannel | xargs sed 's/\bqtwebchannel\b/\0-5/g' -i
git checkout NEWS
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* gnu/packages/qt.scm (qtwebsockets): New variable.
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Automated via:
git grep -l qtwebsockets | xargs sed 's/\bqtwebsockets\b/\0-5/g' -i
git checkout NEWS
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* gnu/packages/qt.scm (qtquickcontrols2): New variable.
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Automated via:
git grep -l qtquickcontrols2 | xargs sed 's/\bqtquickcontrols2\b/\0-5/g' -i
git checkout NEWS
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Automated via:
git grep -l qtquickcontrols | xargs sed 's/\bqtquickcontrols\b/\0-5/g' -i
git checkout NEWS
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* gnu/packages/qt.scm (qtdeclarative): New variable.
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Automated via the following commands:
git grep -l '\bqtdeclarative\b' | xargs sed -E 's/qtdeclarative/\0-5/g' -i
git checkout NEWS
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