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* tests/lint.scm: Add call to 'unsetenv' to remove 'http_proxy'.
* tests/publish.scm: Likewise.
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Fixes <http://bugs.gnu.org/22281>.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter. Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
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Fixes <http://bugs.gnu.org/22391>.
* tests/cran.scm (beautify-description: use double spacing,
beautify-description: transform fragment into sentence). Move
from here ...
* tests/import-utils.scm: ... to here. New file.
* Makefile.am (SCM_TESTS): Add import-utils.
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* guix/import/gem.scm (make-gem-sexp): Add synopsis argument.
(gem->guix-package): Pass unbeautified synopsis to make-gem-sexp.
* tests/gem.scm: Adapt it.
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* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
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* tests/derivations.scm ("derivation fails but keep going"): New test.
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* tests/derivations.scm ("derivation #:leaked-env-vars"): New test.
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* guix/utils.scm (delkw, ensure-keyword-arguments): New procedures.
* tests/utils.scm ("ensure-keyword-arguments"): New test.
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* guix/scripts/package.scm (find-packages-by-description): Change 'rx'
parameter to 'regexps'.
[matches-all?, matches-one?]: New procedures.
Use them.
(process-query): Collect regexps from all 'search' queries, and pass
them to 'find-packages-by-description'.
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Document it.
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Before that it would include #f for most origins since that the default
value of 'origin-patch-guile'.
* guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile'
returns #f, use (default-guile).
* tests/graph.scm ("bag DAG, including origins"): Check for an edge from
O to (default-guile).
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Fixes <http://bugs.gnu.org/22280>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic
%BAG-NODE-TYPE. This is a followup to 38b92da.
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Fixes <http://bugs.gnu.org/22259>.
Reported by Nikolay Merinov <nikolay.merinov@member.fsf.org>.
* guix/scripts/build.scm (%standard-build-options) <-L>: Augment
%PATCH-PATH.
* tests/guix-package.sh: Add test.
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Fixes <http://bugs.gnu.org/22073>.
Reported by Federico Beffa <beffa@ieee.org>.
* guix/profiles.scm (package->manifest-entry): Use
'package-transitive-native-search-paths' when computing
'search-paths' field.
* tests/profiles.scm ("package->manifest-entry, search paths"): New test.
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* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
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* guix/gexp.scm (<local-file>): Rename constructor to '%%local-file'.
Add 'absolute' field.
(%local-file, extract-directory, absolute-file-name): New procedures.
(current-source-directory): New macro.
(local-file): Adjust call to '%local-file'.
(local-file-absolute-file-name): New procedure.
(local-file-compiler): Force the 'absolute' field.
* tests/guix-system.sh: Test whether 'local-file' canonicalization
works.
* doc/guix.texi (G-Expressions): Adjust.
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* tests/graph.scm ("node-transitive-edges, no duplicates"): New test.
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* guix/import/cran.scm (description->alist, listify,
beautify-description, description->package): New procedures.
(table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove
proceduces.
(latest-release): Use parsed DESCRIPTION instead of SXML.
* tests/cran.scm: Rewrite to match importer.
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* guix/derivations.scm (substitution-oracle): Add #:mode parameter and
honor it.
(derivation-prerequisites-to-build): Likewise.
[derivation-built?]: Take it into account.
* guix/ui.scm (show-what-to-build): Add #:mode parameter. Pass it to
'substitute-oracle' and 'derivations-prerequisites-to-build'.
* tests/derivations.scm ("derivation-prerequisites-to-build in 'check'
mode"): New test.
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* guix/store.scm (set-build-options): Add #:rounds parameter and honor it.
* tests/store.scm ("build multiple times"): New test.
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* tests/gnu-maintenance.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/gnu-maintenance.scm (release-file?): Export.
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* guix/store.scm (%protocol-version): Set minor to 15.
(build-mode): New enumerate type.
(build-things): Add 'mode' parameter; pass it to the RPC.
* tests/store.scm ("build-things, check mode"): New check.
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* guix/scripts/lint.scm (patch-file-name): New procedure.
(check-vulnerabilities): Use it to filter out patched vulnerabilities.
* tests/lint.scm ("cve: one patched vulnerability"): New test.
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Fixes <http://bugs.gnu.org/21289>.
* guix/scripts/lint.scm (package-name->cpe-name, package-vulnerabilities)
(check-vulnerabilities): New procedures.
* guix/scripts/lint.scm (%checkers): Add "cve" checker.
* tests/lint.scm ("cve", "cve: one vulnerability"): New tests.
* doc/guix.texi (Invoking guix lint): Mention it.
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* guix/cve.scm, tests/cve-sample.xml, tests/cve.scm: New files.
* Makefile.am (MODULES): Add guix/cve.scm.
(SCM_TESTS): Add tests/cve.scm.
(EXTRA_DIST): Add tests/cve-sample.scm.
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* tests/hackage.scm (eval-test-with-cabal): Add optional argument.
(test-cabal-3): New variable and test.
(test-read-cabal-1): Exercise more parsing variants.
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* guix/utils.scm (canonical-newline-port): New procedure.
* tests/utils.scm ("canonical-newline-port"): New test.
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* gnu/services/dmd.scm (assert-no-duplicates): Rename to...
(assert-valid-graph): ... this.
[provisions]: New variable.
[assert-satisfied-requirements]: New procedure.
Use it.
* tests/guix-system.sh: Add test with unmet dmd requirements.
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* guix/scripts/graph.scm (bag-node-edges): Remove 'filter' call. Add
case for 'origin'.
(%bag-node-type)[edges]: Add filtering here.
(%bag-with-origins-node-type): New variable.
(%node-types): Add it.
* tests/graph.scm ("bag DAG, including origins"): New test.
* tests/guix-graph.sh: Add 'bag-with-origins'.
* doc/guix.texi (Invoking guix graph): Document it.
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* guix/scripts/download.scm (guix-download)[parse-option]: Call 'leave'
when passed an extra argument.
* tests/guix-download.sh: Add test.
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Fixes <http://bugs.gnu.org/21958>.
* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
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Fixes <http://bugs.gnu.org/21410>.
Reported by Alex Vong <alexvong1995@gmail.com>.
* tests/guix-environment-container.sh: Exit with 77 when
'((@@ (guix scripts environment) assert-container-features))' fails.
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* guix/graph.scm (%node-edges, node-edges, node-back-edges)
(node-transitive-edges): New procedures.
* tests/graph.scm ("node-edges")
("node-transitive-edges + node-back-edges"): New tests.
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* guix/scripts/graph.scm (<node-type>, <graph-backend>, emit-prologue)
(emit-epilogue, emit-node, emit-edge, %graphviz-backend, export-graph):
Move to...
* guix/graph.scm: ... here. New file.
* guix/scripts/system.scm, tests/graph.scm: Use it.
* Makefile.am (MODULES): Add it.
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Fixes <http://bugs.gnu.org/21817>.
Reported by Petter Berntsen <petter@mykolab.ch>.
* guix/scripts/gc.scm (guix-gc)[assert-no-extra-arguments]: New
procedure.
Use it for actions 'collect-garbage', 'optimize', and 'verify'.
* tests/guix-gc.sh: Add tests.
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Partly fixes <http://bugs.gnu.org/20255>.
* guix/scripts/package.scm (search-path-environment-variables): Change
'profile' to 'profiles'; expect it to be a list.
(display-search-paths): Likewise.
(%default-options): Remove 'profile' entry.
(%options) <--profile>: Keep previous values associated with 'profile'
in RESULT.
(guix-package)[process-actions, process-query]: Handle the possible
lack of 'profile' pair in OPTS.
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* tests/guix-environment-container.sh (current_dir): New variable. Use
it when grepping "mounts".
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* tests/gexp.scm ("program-file"): Skip when SHEBANG is too long.
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* guix/import/pypi.scm (make-pypi-sexp): Use "pypi-uri".
* tests/pypi.scm: Update the tests accordingly.
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* gnu/build/linux-container.scm (user-namespace-supported?,
unprivileged-user-namespace-supported?, setgroups-supported?): New
procedures.
* tests/container.scm: Use predicates.
* tests/syscalls.scm: Likewise.
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* tests/guix-environment.sh: Export 'SHELL'.
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* tests/store.scm ("write-file & export-path yield the same result"):
New test.
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* guix/scripts/environment.scm (options/resolve-packages): Match against
lists of packages when evaluating expressions.
* tests/guix-environment.sh: Add test.
* doc/guix.texi ("invoking guix environment"): Add docs.
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This patch changes the --ad-hoc flag to be positional. That is, the
packages that appear before --ad-hoc are interpreted as packages whose
inputs should be in the environment; the packages that appear after are
interpreted as packages to be directly added to the environment.
* guix/scripts/environment.scm (tag-package-arg, compact): New
procedures.
(%options): Tweak the handlers for --load and --expression options.
(options/resolve-packages): Preserve package mode tag.
(parse-args): Tweak argument handler to use package tagging procedure.
(guix-environment): Apply ad-hoc behavior on a per package basis.
* tests/guix-environment.sh: Add test.
* doc/guix.texi ("invoking guix environment"): Document new behavior of
--ad-hoc.
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* tests/guix-environment-container.sh: Print the content of
$tmpdir/mounts.
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* guix/scripts/build.scm (show-help): Add help text for --file option.
(%options): Add --file option.
(options/resolve-packages): Handle 'file' options.
* tests/guix-build.sh: Add tests.
* doc/guix.texi ("invoking guix build"): Add doc.
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* guix/scripts/substitute.scm (lookup-narinfos/diverse): New procedure.
(lookup-narinfo): Use it.
(process-query): Change #:cache-url to #:cache-urls.
[valid?]: Remove 'narinfo?' check, which is no longer necessary.
Use 'lookup-narinfos/diverse' instead of 'lookup-narinfos'.
(process-substitution): Change #:cache-url to #:cache-urls.
(%cache-url): Rename to...
(%cache-urls): ... this. Turn into a list.
(guix-substitute): Remove 'getaddrinfo' test with early exit. Adjust
calls to 'process-query' and 'process-substitution'.
* tests/substitute.scm: Change '%cache-url' to '%cache-urls'.
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* guix/scripts/system.scm (specification->file-system-mapping): Move from
here...
* guix/ui.scm (specification->file-system-mapping): ... to here.
* guix/scripts/enviroment.scm (show-help): Show help for new options.
(%options): Add --container --network, --expose, and --share options.
(%network-configuration-files): New variable.
(launch-environment, launch-environment/container, requisites*,
inputs->requisites): New procedures.
(guix-environment): Spawn new process in a container when requested.
* doc/guix.texi (Invoking guix environment): Document it.
* tests/guix-environment-container.sh: New file.
* Makefile.am (SH_TESTS): Add it.
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* guix/scripts/challenge.scm, tests/challenge.scm: New files.
* Makefile.am (MODULES): Add the former.
(SCM_TESTS): Add the latter.
* doc.am (SUBCOMMANDS): Add 'challenge'.
* doc/guix.texi (Substitutes): Add xref to 'guix challenge'.
(Invoking guix challenge): New node.
* doc/contributing.texi (Submitting Patches): Add note about using 'guix
challenge'.
* po/guix/POTFILES.in: Add guix/scripts/challenge.scm.
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* guix/scripts/archive.scm (show-help, %options): Add --extract.
(guix-archive): Honor it.
* tests/guix-archive.sh: Test it.
* doc/guix.texi (Invoking guix archive): Document it.
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* gnu/services/dmd.scm (dmd-service-back-edges): New procedure.
* tests/services.scm ("dmd-service-back-edges"): New test.
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