From 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010 Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 2 Oct 2018 16:16:45 -0400 Subject: gnu: Add r-absim. * gnu/packages/cran.scm (r-absim): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b567fdc0ce..4da1664c67 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6131,3 +6131,31 @@ that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented.") (license license:gpl3))) + +(define-public r-absim + (package + (name "r-absim") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbSim" version)) + (sha256 + (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m")))) + (properties `((upstream-name . "AbSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-powerlaw" ,r-powerlaw))) + (home-page "https://cran.r-project.org/web/packages/AbSim/") + (synopsis "Time resolved simulations of antibody repertoires") + (description + "This package provides simulation methods for the evolution of antibody repertoires. + The heavy and light chain variable region of both human and C57BL/6 mice can +be simulated in a time-dependent fashion. Both single lineages using one set of +V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins +with an initial V-D-J recombination event, starting the first phylogenetic tree. + Upon completion, the main loop of the algorithm begins, with each iteration +representing one simulated time step. Various mutation events are possible at +each time step, contributing to a diverse final repertoire.") + (license license:gpl2))) -- cgit 1.4.1