From 46d78bf04508617cd14c17235c89bc831309be45 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sat, 29 Apr 2023 15:23:55 +0200
Subject: gnu: r-hpar: Avoid internet access.

ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
---
 gnu/packages/bioconductor.scm | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 78ae097c77..87e43992b1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7128,6 +7128,20 @@ matrix to solve the memory problem.")
         (base32
          "1sg0mjada72a13xh3k6xsiaff7xj4mp76r6i8iab8nfkvng07p4i"))))
     (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'set-HOME
+           (lambda _
+             (setenv "HOME" "/tmp")))
+         (add-after 'unpack 'avoid-internet-access
+           (lambda _
+             (setenv "GUIX_BUILD" "yes")
+             (substitute* "R/zzz.R"
+               (("ExperimentHub::createHubAccessors.*" m)
+                (string-append
+                 "if (Sys.getenv(\"GUIX_BUILD\") == \"\") {" m "}"))))))))
     (propagated-inputs (list r-experimenthub))
     (native-inputs
      (list r-knitr))
-- 
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